G69400


Basic Information

Item Value
gene id G69400
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9974424 ~ 10028351 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU86698
AACAAAAGGTGGGGGTTTTCCTTTTGTTCATTCAGAactttaaatcttaaatgctGAAAAGCATTAGAAGAACAAAGCAAATCCAGTGCTAAGAATACATTTCTCTATGAACCACCTTTTTTCCAATATTGAGgctatttgaattaatttagtcACACTGAAATggcattttcagaaatgtgttaaataaactttgcttccctgttttttttttttttttacattttaaaatatttcctgtAATTGTGTCTGAACATACAAGACAAGAAAGATAAAAGCAATACTGGAATCGATTGGTCATGTGTACATGCACACTAGATCCCATAACATCTCACTCTTGTGTCTTATCATTAGTCGTTTTAAGTGTTGGTTCACTTTATATAAAACTCTGTAAAAGGTATTCATAGTATATCAAATTTTGAACTGGAATACCTTTTCCACTTTTAGGTGTACaaaatgttcataatcatgATTTGCCTTCATTTGGCACTGGGAGTAATAacttatatgtttttaaatgatgtttgttttctatattttgttacatttaataatcATGCTTACActtcaaatgcattcaaaaggAAATCTCATGTCAGTGCATGCAAACGCTCTTTGTAAAGCATCTATCAGGCCACTAGAGCTCCatgttagttatttttttaatatgaattcaaATAGTAAGGTTGTTAGTAGAAGTATTAATACTGGTAGTACTTCTTTATAATCAGTATGCATCTGATTAGACATCTTTCCAGATCAAATTCTCTTCACATGTCTTTGCCACATTCAGGGCACAAGATGTCGTCTCTCTCGGTCAGGAATCCTCGGCCGACCAGGGAGACGGAACACTTTTTGCAGTTGAAGCAATCGTTGTGCCACTGGCGTTCCTCAAAGGAGATGTATTTGCTCCCTCCAA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU86698 True 919 lncRNA 0.34 2 9974424 10028351

Neighbor

gene id symbol gene type direction distance location
AMCG00014334 LOC107748535,LOC108247996,LOC104928562,LOC103473625 coding upstream 57635 9914125 ~ 9916789 (+)
AMCG00014337 NA coding upstream 66162 9841023 ~ 9908262 (+)
AMCG00014336 NA coding upstream 165544 9803957 ~ 9808880 (+)
AMCG00014330 NA coding upstream 492369 9475409 ~ 9482055 (+)
AMCG00014329 NA coding upstream 516337 9443199 ~ 9458087 (+)
AMCG00014342 nck2b coding downstream 96803 10125154 ~ 10145702 (+)
AMCG00014344 NA coding downstream 128114 10156465 ~ 10162165 (+)
AMCG00014352 NA coding downstream 200649 10229000 ~ 10242261 (+)
AMCG00014351 LOC107688773,LOC102224404,LOC106959393,LOC103459619,LOC108266990,LOC107099852 coding downstream 280071 10308422 ~ 10318002 (+)
AMCG00014350 NA coding downstream 324494 10352845 ~ 10380421 (+)
G69384 NA non-coding upstream 64376 9901450 ~ 9910048 (+)
G69326 NA non-coding upstream 598074 9366537 ~ 9376350 (+)
G69232 NA non-coding upstream 1083590 8890586 ~ 8890834 (+)
G69206 NA non-coding upstream 1238485 8734323 ~ 8735939 (+)
G69023 NA non-coding upstream 1838214 8133288 ~ 8136210 (+)
G69428 NA non-coding downstream 26140 10054491 ~ 10054711 (+)
G69431 NA non-coding downstream 27026 10055377 ~ 10055733 (+)
G69457 NA non-coding downstream 195320 10223671 ~ 10224035 (+)
G69499 NA non-coding downstream 464796 10493147 ~ 10493396 (+)
G69540 NA non-coding downstream 808853 10837204 ~ 10838230 (+)
AMCG00014272 tbc1d23 other upstream 2491864 7464503 ~ 7482560 (+)
G68848 NA other upstream 2557830 7413640 ~ 7416594 (+)
G68830 NA other upstream 2624957 7346195 ~ 7349467 (+)
G68475 NA other upstream 5322460 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 5842706 4127476 ~ 4131718 (+)
AMCG00014345 NA other downstream 119628 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 3217958 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 3626887 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 4161213 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 4274096 14302447 ~ 14356868 (+)

Expression


Co-expression Network