G69539


Basic Information

Item Value
gene id G69539
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10815771 ~ 10821072 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU86856
CACTATAACATACAAACTGAAATACTGAgatgattaaaacaattaaacacataaaaaggTGGAATGTACTGCAATTTAATAtgacaaatattacaaaaaataatatatatcttaACATGTCTTTAGTCAAGGTAAAATATGTGTATGGCACATCAAATAATCAGTTACTGGGTGCCAATAATTCATTGAACTCCTTGGGCTACTGGGACAAAGGCACAACTTAGTGATTATGTCCAAACAGTTTCCTTCAAGGTCTTGTGGCCATTTCTCTTTCTGAATGATCACATTGTGGAGTCATAATGAAATGATTTGTCACTCAGTTATGTAACCCATCTTCTAAAGACTTTTCAGATTTCAGTTACTCACGTCTCGCTTTGACTTAAGCTGTATATGTGCAGACATGAGataacattaaaagtaattatttggATCAGTCCAACTGGCTGTGTGCAAGTATCTTTAATGGAGCAGGTTGACGAGATTACAAATCTCCATATGCTAATGCTCATTCATGTGTTTAAAGAAAACTGGACAGAAAGGTACATTCCTAGTAGAGCAGGCAAAACAAGatgcacttttaaaaatgctcAAATGGACACCTATTATATAAGGGTTTAATCTTCTATAAAGAAATGGGTAGAAGTTCAATCTAAACACTTCCACTGTGCAAAACCTTCTTAGGCAGTGTGacattatgtttttaacaataaaacacaattaacaattacaaataaataacaaatgaagtactaagtgaataaataagcaaataaacaatgttaagTTGGCAAGCTaacattttgcagaaaaagtatgtgacataTGTGGCACAGTGTTCAATATACAGtatctaaaatatttaaagtggATGAGGAGTGCACCAGTTTGGAACAacgcaaaataaaatacttattacAATGTTTACTCAATGTCAGGGTCGACTGACTTCTCAAAAAACTGTCTTGATTTAAGAAACACCATTAACTTGTTTTGACCTCACAAAGATGCCATActtaatacataatatttacaaGAGTAATCAGTTTATACAAGCCACAGTTATTGAGCTTGTTGATGCCAGTTTTTACGTGTGGagtttgatcattttaattttagcaATGCATCTTGTAATTAAATGGAATGGCTTCAattccaaaatatgttttataactGAAGGAAATCTACTTATATACAAAATGAGGTTACTgggcaaaaatataaatgaatactcTGGTAGCAAGATGTATATGTTTTGAAGTCATGTTGTTCCAGTTAAGATCCACAATTGTATTGATAgactggtttattttatattttaattaaggtGGTTATAGTTActtataaaattaagaaaaaggcCAGTAACAAGATCCATATTCCTACCTCCTAAAAGGATCTCCtgaggtaaaataataaacttccCTCTccatatcaaattaaaaaggatGGACAATcaagaaaaatacagtaaagcCATTGCTGTCTGCATCACTACTGGAAAGCGCAAACTTATTTTAGTTCCAGATAAGACAGTCATTTCTGTATGCAGGAGGACCAACGAAATCCTGTGAGAGGCTTCGGCTGAACTCGAACCGTGTTCGGCATTTCATGAGTGTGGAAGTGACACAATTTGTGCTTTATTGCTTTACATGAATGtataaaatgctgaaaacatgtcaacagaccacaatttcaaaacaaatagcGTAAATTGaacttaaaattatatttcaatttacaaaataaaattatgaaaaagcagcacaacacacaattttttctaatatacagtacatcatAATAGCAATGTTTATGGACTGTGTAAAGCCAATAATATGCATTTCCTGCACCAAAAGGCAAGAGGACTGTTCTGAAATGTTGCCCTAATGATTTGCATTTCACTGCAGAAGGGCACGTGATTTCTCTTCTGAAAGGAAAGTCTTGGCCTTTAGTAGTGTGTGAAAAAGTGAGTGAGTTAATTGGAATTAAAGTACTTATACAAGGAACCTTTACCAGCCAAAAGTAATGTATGTTAGTTGGCATACAATGACAATATATTCACAGAAAAGAAAGTCTTAAGCACAATAATTTTCTGTTTGGGCTGATGTGGCCATGCAAATTCAAAGCAGCATCAtactgtgtttttcattcatttcagtgCACCCCGTGTTTTTTATTCAGAGAAATGGACATACAAATGTAGCACTGGGGAGAATTActgtatgaataaaaacaagttgaaaaaacaattactttcaCAAATTGTCTCATTTTTCTTTCGGAGAAGAGGGGTATACGACTCCTTAAACTTCTTCACAAGTGCAAAGGGTTCATTAATTCACCAGTCAGTTATATAGAAATGTAGATTTGCAGATTTGGTTGCGTTGAATCTGACTGAAAGGACAGAtgaaacaacaatgaaaatgtgagcTGCAAACATGTACAGCCACATAAAGCCTTCTGTCTGGCTTTGTGCTTCATTTGAGCGAATAACAGACGGACTGCTAACCAAACAAGAAAGTTTTGTGGCGGTGATGGAAGTTTGAAAAAATGTGCTGTTGTCATTTTTCTCTTCAGGGCAGTATTTGCAAAACATCAACCACAGAACTGAGTGCACATCCTGCCTTATATAAAAGTAAACTGGAGGGGTGTATAAAAAACAGTCATGAACATCTTGGGGTTAATGTCAGGATATTGCACAATTGCATTACTTGTTTATTTGcttggttgttgttttgctttattcatgtagttatttaacacaaaatggTGCAGAAATAGCACAGTCATACATGTTAAGTGAACTGCATTGCAGATGCAGTATAGAGTCATCATCCATACCAACCAACAAAACTGTAGTCTATACTATATGCAACTGCAGTAAACTGTAAACACTGCTTTGTTTCTCTCGGTTGTATTTCTAGGAACAAGCAAGTATTGAGAAAGAGCAAAGTATCTGCCTAAACCTCAAGTATGACTGGCTTGTAAATATGATAATTAGACAGTGTTTAGTTAGGTTTGGAAATGTTTCTCAGAAAGCTCACTCTCTATACTGGGAAAAGACAAGAAGTGCAATTGGAAGGGTTCTTTGCATATCGATAAACCGTCTCGCTCATGCACAAAAGAagatattaatgtaaaaaaatgatatcatttaaaatgtcattcattACAGGTAAAATGTACCTGGAATTGTACCCAGAATTAAATGAACTTGAAcaattgtatcttttttttttcagttcattaaAATCATTCATGTAAGTGCAGGCAGTCTTCTCAACATTTCAGAGGTGCCCATATCTGTATTTTGTAACTTTAGATACCTATCACAGTTCAATGTATATACAGTCCTTGAAGCACACCATTATTTGAGATGATTTTTGCAATCAGCTGACACTTGAAATGCTACAAAAGTTTGTAGGATTAAACATGTCAGTATGCGATTTGAGCTGGCAGTGTCTAATCTTATGAATAGGGAACAGCTTTAGAAAAGtatgagaaatacattttcaaggaaATCGCATAGAAATGTATAGGTATTCATCGCTATCTAAAGACATTTACATGTAATTGTGctgttacattttctgaaagacCTATATAGAATACGAACTATATACAAATTCGGCATCATATCTGTAGGAAAATGTTGTATCTTTGCCAATACGTTTAATGACTGCTTAAGAAAACTGTATACAACTCAGGGCACAGAGGTATCGTTTGTGGAAAAGGTCTTTTCATGTTATGGATTTTATGGCATTCTTATGTATGTTCTGAACCACATCTTTAGCAAAGTCATTTCTGTTCTGGGATGTGTATTCCTTTCGGTTgcaacatttctttaaataacagTAGAAGCAACGAATCAAAATGCTAAAGGCAAAACTACTCAAGTCCAAAGCTGCCCCCCAACATGTTTTCTGGAAATCAGTGCTGTAGATTATCCCACATTATGGCACAACCATGCTGGGGGAAGCATATAAGCAGCAAAATGGCTtctaatgttatttatttatttatgtttcaattTCAGATTCAATTGTATTAGCCGTAGGACGATCAGTAGTGTTTCGCCAACAAATGTCTGCATTTCCCTGAAACTACAAGGTTATCTCAGGGTCTCCAGAACCTGAACTTGGTAATAATAGCCATACctgaaaaggtttttaaaaagtgaGTGCACTGAGGTCAATATTATGTCCCCTTGAAGTCTTGTTAGACATCCGTCACCAGTACAATTAAGTAAAGGCAACCAGCACCAGTTGGGTTTAAGTTTCATAGCATGGCCTATAAAAAAATGTGACTGCTTTTGTCCCCTTTTCATCCCAGAAAAATACGGATGTGTACAAAATGATTATGTTACCATTCAGTAAGTTACACAGGCTAACAATACTTCTTTTCTCTCTTGAAGATAGTGACTATTTGAAACAGCCGTCTATATAAACACATGGCTCCATCCTTTGGACAGTATGATGAAACATTCTCATTATAGGGCTTTCTCTGCCAATGTATATCTATAGCAGTTGGCCGTCCTCAGCCTGGTCCTTATCAGTCCCCCTGGTTTTAAAACGAGGAGCCTGAAGTGAGAACATTGCGGTCCTTAGTTCCCTGTATCTGACGTCAGCTGTGGATGTGAAAGAGCTTCACAACACCCAGCAAGTCAGGCTTATTTGCTAGTTCATCAGTCTCTGTCTGACAAAGGGGAGTGGACAAAAAGATCTGATAGACTCCAGTGTAATGGGTCCAGTAATCTAGGCGGAGCGGGCTGTCATGAGATGCGTCTCACACCTTCTTCGACAGAGTTGTTTTTTTGCcgggcgggggaggggggggaggtgCGATGGTCTTGTGCTCTGATTTATGGATGATTTGTTGCCAGTCTTCCCTCGCGTCGCACAGCTTCCTTCTCCACTCCAATAACTCATGTAGGGCCGTGCTTTCGTTCTGTGACAGTCGCAACTGATGGATGAcctgcaagaaaaacaagagaGTGCTAAAAGTCGTGGTGCCCATATCTGTTACCTGCATTAACTATTGGTATTAGGTTTTTCAAATGTTCTACCCTTTCATTGATTTAGTCGCTTTTCTCCCTTTATTCCTTACAATTCATCCTTCTTCACCTCCTTCCTCTCAAAGCACTCCTTCCTTTTAGCCTGCTGTGGAAGAAGGTGGAAATGGCTGCAggctcccccaccccccctacaAGTCATACAGAGCAGCTGGCAAAGGATCTGCCATAATCCCCATCCCCGGAGACCAGCCGCTAAACTTTGCACAGAGGAAAGTAACCCTGGAAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86856 True 5302 lncRNA 0.37 1 10815771 10821072

Neighbor

gene id symbol gene type direction distance location
AMCG00014353 NA coding downstream 107753 10652279 ~ 10708018 (-)
AMCG00014354 NA coding downstream 288802 10525613 ~ 10526969 (-)
AMCG00014347 NA coding downstream 487540 10318244 ~ 10328231 (-)
AMCG00014349 NA coding downstream 514410 10300003 ~ 10301361 (-)
AMCG00014348 NA coding downstream 559396 10241006 ~ 10256375 (-)
AMCG00014358 NA coding upstream 78936 10900008 ~ 10903196 (-)
AMCG00014359 col4a1,LOC107715912,LOC107557928 coding upstream 140177 10961249 ~ 10974117 (-)
AMCG00014360 NA coding upstream 153393 10974465 ~ 10991144 (-)
AMCG00014364 NA coding upstream 267675 11088747 ~ 11096433 (-)
AMCG00014368 NA coding upstream 283906 11104978 ~ 11121831 (-)
G69536 NA non-coding downstream 19582 10795883 ~ 10796189 (-)
G69535 NA non-coding downstream 22625 10792919 ~ 10793146 (-)
G69532 NA non-coding downstream 38330 10777051 ~ 10777441 (-)
G69531 NA non-coding downstream 42349 10773183 ~ 10773422 (-)
G69530 NA non-coding downstream 47513 10766600 ~ 10768258 (-)
G69743 NA non-coding upstream 948618 11769690 ~ 11771393 (-)
G69759 NA non-coding upstream 1058025 11879097 ~ 11880456 (-)
G69849 NA non-coding upstream 2149181 12970253 ~ 12970555 (-)
G69896 NA non-coding upstream 2264291 13085363 ~ 13086345 (-)
G69950 NA non-coding upstream 2480852 13301924 ~ 13302379 (-)
G69537 NA other downstream 17624 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 754541 10058097 ~ 10061230 (-)
AMCG00014340 NA other downstream 798020 10001134 ~ 10017751 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other downstream 1498604 9305239 ~ 9317167 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other downstream 2431547 8383285 ~ 8384224 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other upstream 303957 11125029 ~ 11137086 (-)
AMCG00014374 NA other upstream 838939 11660011 ~ 11667537 (-)
AMCG00014412 LOC106574775,LOC107704546 other upstream 2266536 13087608 ~ 13133751 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 5901001 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 6625796 17446868 ~ 17462290 (-)

Expression


Co-expression Network