G69556


Basic Information

Item Value
gene id G69556
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10959326 ~ 10961929 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU86875
TACACAATATGAATTTTGGAGGTGAAAAGATACACAGGGGAGTTAATTAAGTTTTCCTTTGATCTAATCTTGGTCTCGTCCTCaagtaactgaaaataatttgtttttccagttttggcTTGGTTACACATTTACCACAAAAgaatgagaggagaggagattGTCATAAACATCCCTGTGTGTTCTTGATTTTTCTAAAACAGTTGCCACATCGTCTTAATCGGACAGACAGCAGTCAGATAGTTAACTGTGATTTGCTATCGATTACCAATAACGCAAAGCATGTAAACAAGCACAAAAACTGGATGAGGTCCGTTTaaaaaaagccaaaacaaaacaaaatgaaaagtcatACAATCATTTGGCACGTATTCCCTAGGACAACTACCaaagtgtgtgtttagtttgcAAACTGGAAAACCCTAGGCATGTGTCATAAACGAATCACTACAAAACCTTAAGATGTGAGAATCTATGAGGTGTCtaacaggagaaaaaagaatGTTAACACAACTTTGTTACTTTTCCTGtaatgttctttatttaaatatacacctAATCGTTTTTGGAAGACAACTGCCTATTTATCAGAACACTATCTAAACGTTACCTGTTTAtttcacaaagcaaaacagcacAGTAGTATTATATATTAAGAATTAGGAAGAATTTAGTCTGTATACTCAAGTAATTCAGTGTACAAGTTTGTGTGAAAGTCTGTGGTTCATTTGGCATATAAAACcctgaaaattaaatacagaaaaaaaaaaaaaaaccttcaaaaCCTAGGGTGTAGAACTTAGAATATTTTTGTAACTGAGTAGTCATGACATGTTATAAACAGATTGAGTCTTAATGGGGCCAATATTAGCATACCCTGGTATATTGTTTTCGGGGAGTGTGGCtaccaattattttaaatcccccaaaatgtatttatgcacaTGGCTAGTTAAGACATAAGTAACACACGCAGAAACACATTATTGTCAAAGCATAATAGTTGAAAGATTAGTTCACTTTAAACATAGTGTGacaaacatataataaaaaagcacaagtTATCATCTGAGACAATCCGCATTCTATTgacatgtattatgtattaactaaaaaatatatttaaaagaggaattacttttctgttttgcaaaagagatattttttttaataaattacagcatTTGCTTTAGGTGTTATGTTTTATCAGccttaaaacatgcattttacattaGAGTAATTCTGATGGTACATGCAGCGGCCATTTTTTATTCCCCTTTGTCCATATGTCTATGATCATTACAATGTTCATGTGACTGTATTGTCCTTTCAGTTATTTCTGTACACCCAATAAAACCACAATTCTCTAATATGACTCTCCAATTCGCCATGTTAAAGCAACGCTCTACGTGTATTGGAAATATATCATATGTGTCATATGACTATGAGTGCTCAATTACAAATATCTCTAACAACTGAAAACCCCGTTCTTAACATTAGTAcatctttcaaataaaattatttatatctgtAGGCTGGAGTTAGGTGGTATCCACAAAAGTGAAggaactgaattaaaacatatatcaaAAGGTAGATATACAAGTAAGCATAGAATGCTTTTACTAATTGATAGCACCTGACTCACAAATATTCCTTTTAAATGGTCACCTGCTTACTTATATAGTCAGTGCAGTAATAAACAAAGTGCCATTTGGTAAAGAAACGATACTGAATGTTCATTTTTCTTAAAGATGTGCCAGTGGCAGGATGCATTTCATGGCTTGTTCTCCCATTGCTATGCACTATAGaaattgctttttcattttggtttacatctctcattttctttcttacaAAATAGCACCAtggtttgtaaaaataataataataatacaatgaagGCTTGACGAAAAAAACGTATTATGTCCTCTTCATGCAGACGTGGCATCGACTGATGTGGGTTCGTAAATCTCCTGCTTTCAGGGTCGTGGGCACAGGTTTTGAACATGTCACCAGTATCTATGGTAGCTAGCCAGAAGCTGTAGGAGTTGGCGTAGTAGTTGCAGGTGCCTCTGCCGTGGCACTCAATAAAGGGGGCGCTGCGGAACTCTTCCAGACAGGATCCGGGGGAGGCCAGGGCCTGGCCCGAACCCTCTGCTCCCGCGCTGGTGTGCTGTGGAGGGAAACGAGCAAATCTCCTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86875 True 2206 lncRNA 0.36 2 10959326 10961929

Neighbor

gene id symbol gene type direction distance location
AMCG00014355 NA coding upstream 158016 10766636 ~ 10801310 (+)
AMCG00014356 NA coding upstream 205179 10721084 ~ 10754147 (+)
AMCG00014357 NA coding upstream 287588 10665393 ~ 10671738 (+)
AMCG00014350 NA coding upstream 578905 10352845 ~ 10380421 (+)
AMCG00014351 LOC107688773,LOC102224404,LOC106959393,LOC103459619,LOC108266990,LOC107099852 coding upstream 641324 10308422 ~ 10318002 (+)
AMCG00014362 NA coding downstream 99666 11061595 ~ 11086602 (+)
AMCG00014363 LOC106582132 coding downstream 135638 11097567 ~ 11105850 (+)
AMCG00014361 NA coding downstream 163470 11125399 ~ 11129360 (+)
AMCG00014369 arhgef7a,LOC107668898,LOC107712280,LOC107569023 coding downstream 216032 11177961 ~ 11220774 (+)
AMCG00014370 sox1a,LOC105893305,LOC106586732,LOC101064967,LOC107692134,LOC107718482 coding downstream 430460 11392389 ~ 11393405 (+)
G69540 NA non-coding upstream 121096 10837204 ~ 10838230 (+)
G69499 NA non-coding upstream 465930 10493147 ~ 10493396 (+)
G69457 NA non-coding upstream 735291 10223671 ~ 10224035 (+)
G69431 NA non-coding upstream 903593 10055377 ~ 10055733 (+)
G69428 NA non-coding upstream 904615 10054491 ~ 10054711 (+)
G69610 NA non-coding downstream 259141 11221070 ~ 11221274 (+)
G69681 NA non-coding downstream 679154 11641083 ~ 11641452 (+)
G69722 NA non-coding downstream 757389 11719318 ~ 11722767 (+)
G69739 NA non-coding downstream 821936 11783865 ~ 11784083 (+)
G69778 NA non-coding downstream 1638175 12600104 ~ 12600313 (+)
AMCG00014345 NA other upstream 807413 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 950678 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 3476766 7464503 ~ 7482560 (+)
G68848 NA other upstream 3542732 7413640 ~ 7416594 (+)
G68830 NA other upstream 3609859 7346195 ~ 7349467 (+)
AMCG00014407 LOC107725344 other downstream 2284380 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 2693309 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 3227635 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 3340518 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 4259985 15221914 ~ 15242333 (+)

Expression


Co-expression Network