G69833


Basic Information

Item Value
gene id G69833
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 12980259 ~ 12982434 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU87223
TGATTTCAATACAGGGTAATGGGAGGGTGATTTCATGGAGGGTACTAGGGAGTGTATCCAATATCGTGCGAGAGAAGTAAATGCAGAGTTACTGTGAAATATAGAAAGAAATGTGAAGGAGAGTTGCTGAAAATGGAAGGCTTTTAATGTCCTGTCAGCATATAAAGATGGCTTATTAATAGTTCAGATAAAGGAGCTTTGTTAATGCCGGCTAGTGCCAtctgtgatttttatttgttaaaaataatttaattaattaattaattaattaaacaaatataaatgtttctatACCGGGTCTCTCTTAACTTTCTAATTTTAATACCCTATCTCTAGTGTCAAGGTAAATGGGTTTCTCAATCACATTGTATGGTACTGCTTTAAAGAAATTAGTTTCCAATATAGCTCAGTCTTGATTATTAAATTCAGCTGCTTGCATTCTCTACAGAGAATTGTAGCGAACTGAGGATTTTAAAAAGAGGTATAGTTTAAAAATGCAGGTTTAATAAGACTTGAGAAGGATACAAAGAAACAGACCTCCAGCAATGTAacatcttatttaatttaagacaTCAACATAACGCCATAaaccattgtatttttgcacaggCCTCTTCTCTGTATAATATTGCAGTATATAGATCCCattatttaagattttgttttgcaaagacTTCCCCCCACCTATCCATTAAAGGTtaggaaataaacattttataaataacacatatttaaatatattactgcATGGCTCAATAACAACACCCCATCAGAATCACATtttggcaaaacaaaatgtcctgAATTAACTAAcatattgaattatttgaaaAGAGTTCTGCTTCATGTATTATTCAGTATTGAATATGCAATGCCAAggtaaaaagtacaaaaaaagtgtgtgtgtatatatatatatacacacatacatatacacacacagacacacacatatacatgcatacattcatacatacatatatacacatattgtaTGTAGGTATATATTCACACATGCATGAATACATATTCACACACCTGTAGATTGATAAAGCacattgtgaaaaatgttgATCTCAAATCCTCCTGTACATGAACAGTAAGGGGCATGTGAAGTTTAGCAAAGCCTGTAATCCATTGCtagaatataaataaacccTGTTGTATGGACCACAATGGCATGAATTAGAATAGCTACCTACACCAAGATTGTTCCTAACATATTGATAAGTATTAACCACAGTTGCCATAGGTGGTGTAAGTAAGTTGTAGAACAACAAATATTGGCACTGGATTGGCATTTCAAAGCTTGGGATGTGATAGGGGAATATGTTGGAGAAAGAGGTTGTTTTATTGTGcctaaaacaacacaaaaggtGTTACAGTGATATGGAACAATCCAAACTTCCAGTGTAAGGTTGAGTGAGATAACCAAAGGATTTGTTTCAATTTCTGtctctgtaatttatttgttttactactGATTGCCTACATTTGTATATGAGCAGAATGGCAGAGGGACCTCctgaagaagggaaaaaaatccatgtatgatttttttttttttttgtctaacaATGGTGCTAAACATATAACCGAGTGGAGTACTaaatttaatgtttgttttgtttttttaaataaagatgaatAAAAAATTAATGACTTCCCTTTTTCCCACATCCCCCACAGTGTGAAACCTGAGAGAAACATGTTGGTTATCAGAATAGAAGCAGAGCCTTTTGCACTGAAAGCTTTTATACGACTGCACAAATGCAAGATGGTTAACCTGCATGTGTTCGAATACTGTATGAAAACAGTTCTCAATATTCCAGACAAATATGAAAAAGGCTAAGCAGCAGGATGTTCACCAGATATATTTATCactgaaatgtgtaaatgttaagTCATTTCTGAAACAAGGGCTCAAAACGAAGGTTTCCTTTGGGCATTGAAATGTACCCCTGTTAAGTCACTACGTATTCTCACTTTTTGTGCAAATAAATCTGTAGGTGTTTTAAATGGCTTCATTGTTTCAATAGTATAATTActttgatgtttcttttttttttaacactttcaatTTGGTTTTCACCTCAACACATATTTTAGCTGCAGTCCAAGATAACATTAAGAAGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87223 True 2138 lncRNA 0.33 2 12980259 12982434

Neighbor

gene id symbol gene type direction distance location
AMCG00014403 NA coding upstream 1150 12978471 ~ 12979109 (+)
AMCG00014404 NA coding upstream 1831 12978165 ~ 12978428 (+)
AMCG00014402 NA coding upstream 2164 12970258 ~ 12978095 (+)
AMCG00014392 NA coding upstream 130888 12842790 ~ 12849371 (+)
AMCG00014393 NA coding upstream 139131 12834950 ~ 12841128 (+)
AMCG00014399 jagn1,jgn1a,LOC106574769,LOC105027989 coding downstream 27271 13009705 ~ 13015654 (+)
AMCG00014400 NA coding downstream 47452 13029886 ~ 13040944 (+)
AMCG00014401 tfg,LOC102777061 coding downstream 75431 13057865 ~ 13065977 (+)
AMCG00014406 NA coding downstream 256639 13239073 ~ 13240110 (+)
AMCG00014405 NA coding downstream 258406 13240840 ~ 13245634 (+)
G69778 NA non-coding upstream 379946 12600104 ~ 12600313 (+)
G69739 NA non-coding upstream 1196176 11783865 ~ 11784083 (+)
G69722 NA non-coding upstream 1257492 11719318 ~ 11722767 (+)
G69681 NA non-coding upstream 1338807 11641083 ~ 11641452 (+)
G69610 NA non-coding upstream 1758985 11221070 ~ 11221274 (+)
G69959 NA non-coding downstream 351780 13334214 ~ 13335185 (+)
G69961 NA non-coding downstream 369899 13352333 ~ 13380404 (+)
G70054 NA non-coding downstream 712381 13694815 ~ 13696871 (+)
G70221 NA non-coding downstream 1185012 14167446 ~ 14171012 (+)
G70271 NA non-coding downstream 1484270 14466704 ~ 14467744 (+)
AMCG00014345 NA other upstream 2828346 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 2971611 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 5497699 7464503 ~ 7482560 (+)
G68848 NA other upstream 5563665 7413640 ~ 7416594 (+)
G68830 NA other upstream 5630792 7346195 ~ 7349467 (+)
AMCG00014407 LOC107725344 other downstream 263875 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 672804 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 1207130 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 1320013 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 2239480 15221914 ~ 15242333 (+)

Expression


Co-expression Network