G69896


Basic Information

Item Value
gene id G69896
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13085363 ~ 13086345 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU87308
ATCTCAATACCTTTATTAGCTTTCCAAGAATGTTACAGTTTGTACAGAACACCTAATGGGGCTCCAAAGTGGAATCTTGATTTAGTTATTAGTAATAAccagctgaaaaataaaaacagtgatcTAAACTTAAAGCTAACAGTGTAATATCCTTCAGAAAGTCCAGGTTACTTCTCCCATTAATGATTTATCATATACTTAGGTAGTGTTGAAAGAAAATAGAAGTCGTTGATGTAAtaccaatgaaaacaaaaaacaaaacaaaaaacctactACACCCTATTTGGTCTCCCACCTTTGCAGACACATATAATGcttcttttaaaagcaaaagtgACAAATGTGTGCtccactttcttttttaatacatgaaCAGTATACAATAGAAaaaaaaaaaaaaaaaaaaaaaaagctttttggatTCTGTGAATATTGGGATGAAAATGCATTGAGCCGGGCTGCTCTTCTGAGCTCTGGAAACTGACGGGTTGCTCTTCCTAGATTTTATCGGTAGCCAGGGCCCGGCTGGGTGTAGCCTTGACCATAGGTTGGGCGGTTGCGGGCATAAGGGTTGGAGCCACTAGGTGGAGGGGTCACTGTGCTGCCCGGAGGGGGGGTGAAACCTGGGCGAGGCTGGTAGGCTCCAGCAGGCTGGGTAGGGGCCATACCTGGCTGGGAGGCAGGGGGCATGTTGTAGTTAGCTGGCTGGGAGGCCTGTGTCGTGTAGTTTTGGGCAGGGAAGCTGCCGGGAGGGTACTGCTGGGCGGtctggggctgctgctgctgctgacctGCGAAGCCTGGTGCCGGGGCGGCTGCCTGGGATGTCGGCGGGTTGTAGCTTTggaactgctgctgctgctgcggagTGGGCGGAGGCCCGGCCTGGGGGTTGTAGCCTGCTGAGGAGCAAATACAGTCGGATTAGAGGATGTAACTacttaaataatgtaaacagGAG
>TU87309
ATCTCAATACCTTTATTAGCTTTCCAAGAATGTTACAGTTTGTACAGAACACCTAATGGGGCTCCAAAGTGGAATCTTGATTTAGTTATTAGTAATAAccagctgaaaaataaaaacagtgatcTAAACTTAAAGCTAACAGTGTAATATCCTTCAGAAAGTCCAGGTTACTTCTCCCATTAATGATTTATCATATACTTAGGTAGTGTTGAAAGAAAATAGAAGTCGTTGATGTAAtaccaatgaaaacaaaaaacaaaacaaaaaacctactACACCCTATTTGGTCTCCCACCTTTGCAGACACATATAATGcttcttttaaaagcaaaagtgACAAATGTGTGCtccactttcttttttaatacatgaaCAGTATACAATAGAAaaaaaaaaaaaaaaaaaaaaaagctttttggatTCTGTGAATATTGGGATGAAAATGCATTGAGCCGGGCTGCTCTTCTGAGCTCTGGAAACTGACGGGTTGCTCTTCCTAGATTTTATCGGTAGCCAGGGCCCGGCTGGGTGTAGCCTTGACCATAGGTTGGGCGGTTGCGGGCATAAGGGTTGGAGCCACTAGGTGGAGGGGTCACTGTGCTGCCCGGAGGGGGGGTGAAACCTGGGCGAGGCTGGTAGGCTCCAGCAGGCTGGGTAGGGGCCATACCTGGCTGGGAGGCAGGGGGCATGTTGTAGTTAGCTGGCTGGGAGGCCTGTGTCGTGTAGTTTTGGGCAGGGAAGCTGCCGGGAGGGTACTGCTGGGCGGtctggggctgctgctgctgctgacctGCGAAGCCTGGTGCCGGGGCGGCTGCCTGGGATGTCGGCGGGTTGTAGCTTTggaactgctgctgctgctgcggagTGGGCGGAGGCCCGGCCTGGGGGTTGTAGCCTGCTGAGGAGCAAATACAGTCGGATTAGAGGATGTAACTacttaaataatgtaaacagGAG
>TU87311
ATCTCAATACCTTTATTAGCTTTCCAAGAATGTTACAGTTTGTACAGAACACCTAATGGGGCTCCAAAGTGGAATCTTGATTTAGTTATTAGTAATAAccagctgaaaaataaaaacagtgatcTAAACTTAAAGCTAACAGTGTAATATCCTTCAGAAAGTCCAGGTTACTTCTCCCATTAATGATTTATCATATACTTAGGTAGTGTTGAAAGAAAATAGAAGTCGTTGATGTAAtaccaatgaaaacaaaaaacaaaacaaaaaacctactACACCCTATTTGGTCTCCCACCTTTGCAGACACATATAATGcttcttttaaaagcaaaagtgACAAATGTGTGCtccactttcttttttaatacatgaaCAGTATACAATAGAAaaaaaaaaaaaaaaaaaaaagctttttggatTCTGTGAATATTGGGATGAAAATGCATTGAGCCGGGCTGCTCTTCTGAGCTCTGGAAACTGACGGGTTGCTCTTCCTAGATTTTATCGGTAGCCAGGGCCCGGCTGGGTGTAGCCTTGACCATAGGTTGGGCGGTTGCGGGCATAAGGGTTGGAGCCACTAGGTGGAGGGGTCACTGTGCTGCCCGGAGGGGGGGTGAAACCTGGGCGAGGCTGGTAGGCTCCAGCAGGCTGGGTAGGGGCCATACCTGGCTGGGAGGCAGGGGGCATGTTGTAGTTAGCTGGCTGGGAGGCCTGTGTCGTGTAGTTTTGGGCAGGGAAGCTGCCGGGAGGGTACTGCTGGGCGGtctggggctgctgctgctgctgacctGCGAAGCCTGGTGCCGGGGCGGCTGCCTGGGATGTCGGCGGGTTGTAGCTTTggaactgctgctgctgctgcggagTGGGCGGAGGCCCGGCCTGGGGGTTGTAGCCTGCTGAGGAGCAAATACAGTCGGATTAGAGGATGTAACTacttaaataatgtaaacagGAG

Function

NR:

description
PREDICTED: collagen alpha-3(VI) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87308 True 961 lncRNA 0.47 2 13085363 13086345
TU87309 False 960 lncRNA 0.47 2 13085363 13086345
TU87311 False 958 lncRNA 0.47 2 13085363 13086345

Neighbor

gene id symbol gene type direction distance location
AMCG00014398 NA coding downstream 102868 12907404 ~ 12982495 (-)
AMCG00014397 NA coding downstream 209827 12850007 ~ 12875536 (-)
AMCG00014396 filip1l,LOC100693076,LOC102213048,LOC102798342,LOC101473988,LOC105027992 coding downstream 304525 12778483 ~ 12780838 (-)
AMCG00014395 NA coding downstream 345698 12729727 ~ 12739665 (-)
AMCG00014389 NA coding downstream 358719 12721742 ~ 12726644 (-)
AMCG00014411 impg2b,LOC108432621,LOC107704545 coding upstream 88866 13175211 ~ 13203807 (-)
AMCG00014408 NA coding upstream 122400 13208745 ~ 13237528 (-)
AMCG00014413 txnl4b coding upstream 155481 13241826 ~ 13242652 (-)
AMCG00014410 NA coding upstream 165590 13251935 ~ 13260989 (-)
AMCG00014409 rpl24 coding upstream 176034 13262379 ~ 13265549 (-)
G69849 NA non-coding downstream 114808 12970253 ~ 12970555 (-)
G69759 NA non-coding downstream 1204907 11879097 ~ 11880456 (-)
G69743 NA non-coding downstream 1313970 11769690 ~ 11771393 (-)
G69539 NA non-coding downstream 2264291 10815771 ~ 10821072 (-)
G69536 NA non-coding downstream 2289174 10795883 ~ 10796189 (-)
G69950 NA non-coding upstream 215579 13301924 ~ 13302379 (-)
G69973 NA non-coding upstream 218081 13304426 ~ 13375879 (-)
G70034 NA non-coding upstream 536770 13623115 ~ 13623381 (-)
G70063 NA non-coding upstream 608412 13694757 ~ 13696971 (-)
G70091 NA non-coding upstream 672881 13759226 ~ 13761420 (-)
AMCG00014374 NA other downstream 1417826 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 1948277 11125029 ~ 11137086 (-)
G69537 NA other downstream 2287216 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 3024133 10058097 ~ 10061230 (-)
AMCG00014340 NA other downstream 3067612 10001134 ~ 10017751 (-)
AMCG00014412 LOC106574775,LOC107704546 other upstream 1263 13087608 ~ 13133751 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 3635728 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 4360523 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 4502922 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 4904306 17990651 ~ 18022095 (-)

Expression


Co-expression Network