G70346


Basic Information

Item Value
gene id G70346
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15238803 ~ 15242333 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU87890
tttaataattaaagttaatttaattagcaCACATTTACcacatttacagtttatatttttgcatacagTACAGTCAACCAAGGAGACATTCATTACAGTTCATGAAACAGTTGATAAAACAATAGTTTGTTCATAGGTGCTGAGTTCCATAAGTAAACCGAAAGTAAGCGGTCAGATTTGAGCACACCGCAGCTATACAAGGCCCTTTCTACCACTGTACTTTAGCTTTTCTGTTGTATACACATATTGTAGGAGGCAGTTTCCCATGGCAGATATCTGAGTAAACTACAACAAGAAGGATGAGAGTTTAAGAAGTCTGCATGGGAGAGACTGCAGTGTCTGAAAGGATGCTAGACTCCCGACCTTGAGAGACAAAGgcatttttgatttgttttatctgtGTAAAAGACACCCTTTGTTACTTAGGCTACATTGACTTGTTTTCGCTGCTAAAGCTTGCTTTGTtctgcagtgctgtgaaaaccCAGTATTGTATATCCGCCTCAATGCGGAGAATGATTTTGACATGATAAGCCAAAGATCGCCTCCCTCCTTATCagatgaatatattttttttatctatagAGTTCTTCAATAAAACTGTGTTCCATATTATTGCATTTCAGATGACCAGGACTGAAAATGAAGGcctggtttttttttaaatattgccaAGTGACAGCTCTAGTATTTTTCTATGTATGGAAAACACAATGCTTCATTACTTTCATGATTCAGTGGACGTCTACATTTATTGATCTCATTTTGACACCGCTTATGCTGTGAGCAAACAACATGTGCACATACCTCTGGCCTTTCATTATTTCATACAGAACATAATGCCAATACAAAGCCAACAGGACCTGAAACATGATGAcgttttctagttttttttttttcagtagaaTCTACATGACcacacacaatgtttaaaaaaaaaaaagacaatgaaaataaGCAAAAGTATTTACACTCCGTACAGATATAAAAATTAGAAGCGttgctataaaaatataatctttacaTTAGGAAGTTGAGCGataattcaatataaaaatTAGAATTTAAAGTCTAAATCggcaaattaaaaaagcattgaatatatttattttgcAATGTCAGTTATAGATATGTATTCACACACATCTAtctctttatttcttctttttgtcattaaatgtgtttcttgtttcGTTTCTTCCTTTTCATACCTTAATATACCAAAGTTACCttgaattgaatattgaatattatacAGTGTTTGTATAATAGCTTTTCATAATGTCACTGTACCCTGGGGGGGTAATTTGTTAAAAACCTTCAGAATCTATACAATTTACATGTAATGTGTTTAGgatatttcttgtattttttaattaattgaatatatcCAAAttcctgtaaacaaaataaatataaataaatacacttatcTATAGTGTTAAAAGTAAATtcaattgtaaaacattttaacaaattaaatatctaAAAGGTCCAGTTATATACAGTGTTAATGCACAAAGAACATCTGGTTTGACTCTCCTGTTATTTTCCACAAGGGGGCGCTAACACGCTATAGTTGTAAAAGGAATTGTTTGAATTGATCTCCTTTAGGCAAACGATGAAGTACTCAGTTTCACAGAAGTGGGGGAGGGCAGTGTtgtataaagaacaaaaaactcaGCTGCCTTCATATCATGTTGTAGTTTGTCTGTATATTCCAGTACAAAAAGTTATTTCTAGATAATAAATggtataaattaaacaataccaCATTATCTATTGatctttaaattacacattgtaGGGTAGAACAACTAGAAATTCTCCTTTGTTTCCGCACTTTTCTTGCATGCCATCTGATTGTGTTTATTGATGCAGACGAGCAGAACTCAGTGTATTGATGCCGTCGGATTCATCCCATTCCATTTCATTCACCTTGTGAGCATAAACAGATAAGTGGACACAACACTTCCAGAGCCATGTACTGAAGGATTTCAGAATGGAAGGGATGATTATTCCCTGAAGCCCCCATTCTCCCCTCAGTATGGGAAGTAAAAGGCAGATACAGGAAGCCCCCAGGAACAAAACTGGGGCTTTCCCTGCCGCTCATTAATGCAGAATGCTTTCCAAGTCAACCTGTTTGCATGAAGTCTTCAGTACCTCTTTGGCTCTCAGCACACTTGCccctcaatatatatataaatatatatattccttcaTGTTATTAAAATCTTGCACTTACTCTTACTTATAACTTATATAGCCTTTGGAATTTTAGATATTAGCCtactactttttaaaatttcacGAACTTTGTTTTTAGAATTAGAACAGTGCTATAAAAACGGTAATTGTACATAACATTCTGATTCATAGAATACTGAATGAGTTTCTTGCATACTTTGAATGACACTTGCTTTGAACAGCCCAGTGtatctttccttttcttgtttctcttgGAGAGATTGCTGGGAAACGACTTCGATTTCCACACCCATTCTCTGTCAGCATGTTTTAAGATAGAGAGAGCAGTGGGGAAAATGCACGGTGCACTTTTATCCAGCGCCGCCTGGGTGCTGTGAAGTTCTGCATCATTCTCATTTTGCCTCAGTACCGAAAGGTGGTGCTCTCTTGGTTGGGGTGTCTAGATGTAGAACTCTTGCTCATCGTCGTCAGCCGCCCCCTCTCTGGGGGAGCCATTCTCAGTCTCGGTGCCATGGCCGCTGTCCGCAGCCGAGGGTGAGAGTCTGCACAGGGGGTAGCAGGCGCTGTGAGGCCTGGGGGGGCGGAGAATGGAGGGTAGGGGGGAAGTCGAATGGCAGCGGAGGTAGCTGTGGACGAGGGCTGGTGGCGGGGTGCGACAGGACAGCCCGGAGAAAGATGGGACAGGGTTGCTATGTGCAGAGAGGGGTCTGGGCCGTGGTGGTGGTTGGGGTATGCTCTTGTtgctggagcaggaggagggCCGCACGTAAGCGGACACCACTGACATATCCACGCTGCTGAGCTTGTTTCCCGTGTCCACGTCCGTCTCCTCGGCCCCCACCAGTGCGTCCACGTTGAGCCGGGAGCCGAGGACCAGGGAGGAGCGTGGCGAGGACGCGGGGGAGGCAGAGCggctgctgctggctgtgggGAGGCAGAAGAGGGAGCGAGTCCGATGGCCGGCCCACCAGGACCCCGCCAACTCCGGCTTACGGCCCCTGCTCGCCGCCTCCTCCCCCCCGCAGACACTCGGCAGGTCGTTTTGGGAGAGGCGGTTCTGGGCCCGGGGCCGTGAGGTTGATCTGTTGTAGCGTTTGTTTCTGTAGGAGACTGGGCCTCGTCCCAGGTGCATGCAGGGgacttggggggtgggggtgggtgcGGGGTCAGTATCTGCAGGCACTGGGGCAAACTGGGCAACTGTGTGCCTCCGCCGAGAGTGTCTGGAGGAGCCGTGcacctgcacacacaaacaagcacagaGAGGTTAATGCTTGGTCAGCACAGGCTTTCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87890 True 3503 lncRNA 0.42 2 15238803 15242333

Neighbor

gene id symbol gene type direction distance location
AMCG00014474 gk,LOC105019723 coding downstream 24736 15190111 ~ 15214067 (-)
AMCG00014475 NA coding downstream 50147 15180772 ~ 15188656 (-)
AMCG00014454 NA coding downstream 1053025 14183446 ~ 14185778 (-)
AMCG00014449 NA coding downstream 1060415 14167446 ~ 14178388 (-)
AMCG00014448 NA coding downstream 1091301 14144163 ~ 14147502 (-)
AMCG00014473 ints6,LOC106533356,LOC106582497,LOC107723679,LOC107567782,LOC107685346,LOC107725253 coding upstream 12063 15254396 ~ 15269030 (-)
AMCG00014479 NA coding upstream 50432 15292765 ~ 15297333 (-)
AMCG00014478 NA coding upstream 60009 15302342 ~ 15303905 (-)
AMCG00014477 NA coding upstream 67842 15310175 ~ 15329912 (-)
AMCG00014483 NA coding upstream 93874 15336207 ~ 15348473 (-)
G70315 NA non-coding downstream 179029 15045852 ~ 15059774 (-)
G70238 NA non-coding downstream 1136647 14099364 ~ 14102156 (-)
G70169 NA non-coding downstream 1317473 13919521 ~ 13921330 (-)
G70094 NA non-coding downstream 1466531 13770177 ~ 13772272 (-)
G70091 NA non-coding downstream 1477383 13759226 ~ 13761420 (-)
G70402 sucla2,LOC107705569,LOC107584790 non-coding upstream 131905 15374238 ~ 15376774 (-)
G70407 NA non-coding upstream 141300 15383633 ~ 15386700 (-)
G70425 NA non-coding upstream 263971 15506304 ~ 15506511 (-)
G70420 NA non-coding upstream 280187 15522520 ~ 15525014 (-)
G70458 NA non-coding upstream 401286 15643619 ~ 15644914 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 2105052 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 3571266 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 4101717 11125029 ~ 11137086 (-)
G69537 NA other downstream 4440656 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 5177573 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 1479740 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 2204535 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 2346934 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 2748318 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 3959470 19201803 ~ 19203567 (-)

Expression


Co-expression Network