Gene
RNA
| Item | Value |
|---|---|
| gene id | G70378 |
| gene name | itm2b,LOC108430053 |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030128.1 |
| NCBI id | CM030128.1 |
| chromosome length | 42883965 |
| location | 15350642 ~ 15430852 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| itm2b | Enables amyloid-beta binding activity. Involved in negative regulation of amyloid precursor protein biosynthetic process. Located in several cellular components, including Golgi apparatus; Golgi-associated vesicle membrane; and extracellular space. Is integral component of organelle membrane. Implicated in ITM2B-related cerebral amyloid angiopathy 1 and ITM2B-related cerebral amyloid angiopathy 2. Biomarker of ITM2B-related cerebral amyloid angiopathy 1. |
| description |
|---|
| PREDICTED: integral membrane protein 2B isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU87927 | True | 977 | lncRNA | 0.33 | 3 | 15350642 | 15430852 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00014476 | NA | coding | upstream | 14421 | 15332929 ~ 15336221 (+) |
| AMCG00014472 | wdfy2,LOC106582235 | coding | upstream | 63366 | 15273561 ~ 15287276 (+) |
| AMCG00014471 | NA | coding | upstream | 96671 | 15247771 ~ 15253971 (+) |
| AMCG00014468 | NA | coding | upstream | 171487 | 15164212 ~ 15179155 (+) |
| AMCG00014469 | dmd,LOC106574979,LOC107692624,LOC107665951 | coding | upstream | 213106 | 15089695 ~ 15137536 (+) |
| AMCG00014486 | NA | coding | downstream | 48600 | 15479452 ~ 15485053 (+) |
| AMCG00014481 | NA | coding | downstream | 64373 | 15495225 ~ 15499833 (+) |
| AMCG00014482 | NA | coding | downstream | 87019 | 15517871 ~ 15522481 (+) |
| AMCG00014488 | NA | coding | downstream | 169307 | 15600159 ~ 15617165 (+) |
| AMCG00014489 | lcp1,LOC106582249 | coding | downstream | 199338 | 15630190 ~ 15654845 (+) |
| G70286 | NA | non-coding | upstream | 169822 | 15179845 ~ 15180820 (+) |
| G70271 | NA | non-coding | upstream | 882898 | 14466704 ~ 14467744 (+) |
| G70221 | NA | non-coding | upstream | 1179630 | 14167446 ~ 14171012 (+) |
| G70054 | NA | non-coding | upstream | 1653771 | 13694815 ~ 13696871 (+) |
| G69961 | NA | non-coding | upstream | 1970238 | 13352333 ~ 13380404 (+) |
| G70409 | NA | non-coding | downstream | 19926 | 15450778 ~ 15451268 (+) |
| G70413 | NA | non-coding | downstream | 69706 | 15500558 ~ 15500832 (+) |
| G70415 | NA | non-coding | downstream | 74962 | 15505814 ~ 15506048 (+) |
| G70418 | NA | non-coding | downstream | 91673 | 15522525 ~ 15525015 (+) |
| G70496 | NA | non-coding | downstream | 296582 | 15727434 ~ 15728917 (+) |
| AMCG00014470 | NA | other | upstream | 108309 | 15221914 ~ 15242333 (+) |
| AMCG00014461 | NA | other | upstream | 993774 | 14302447 ~ 14356868 (+) |
| AMCG00014456 | NA | other | upstream | 1145628 | 14189564 ~ 14205014 (+) |
| AMCG00014423 | pou2f1b,LOC107748141 | other | upstream | 1661454 | 13655238 ~ 13689188 (+) |
| AMCG00014407 | LOC107725344 | other | upstream | 2098910 | 13246309 ~ 13251732 (+) |
| AMCG00014490 | rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 | other | downstream | 244779 | 15675631 ~ 15685899 (+) |
| AMCG00014508 | NA | other | downstream | 698627 | 16129479 ~ 16139032 (+) |
| AMCG00014525 | NA | other | downstream | 1034769 | 16465621 ~ 16469209 (+) |
| AMCG00014553 | atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 | other | downstream | 1933946 | 17364798 ~ 17487050 (+) |
| G71004 | NA | other | downstream | 2841002 | 18271854 ~ 18274360 (+) |
