G70418


Basic Information

Item Value
gene id G70418
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15522525 ~ 15525015 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU87982
CGTTTActgttaaataaagtaatatttgtactatatacattatttacagttGTTAAGGCGATGGTACAAACGaatcatgtttaatacattgaaAGAACGAGTGCTGTATAAACATCTGAAATTCCTAAAAGCCATACTCATTATACACAAAAGCcgtataacaaaatatttaacatactTTATTTATGGTACATCTGACTTTAAACATAAAAAcccattaatacaaaataatattcatttgtaaaaaaacaaacaaaaaaaaaaaaaacagtacaactTGTCATGTTTTATCTACATTAGAGCAAACTAGAATAAAACACCCTACTCAAGATTCAGCAGATAGCATTTGTGTGGTTGATACAAAAATTTGGTAAATGTATGATTAATAGAAATGTGAAATCGTAGTTAAGAAACGTTTGGATTTGATGGTTaccaaaatatgaatacatcaGAATTCCTAGACGTCGCaagaaagtaataaataaactttaaagTGCAGATTACATCAAACATGCTAGCTGCCATAATGTACAGGTTTcaaattatgttaaatatgtaaatcaaCTGCTAGTctacaatgcatttcaaactcAAAGTCTGTACTGTAGTGATTGTACATGTGCTCTGGGTTGTGACGGGGTCTGACATTCATTAAGATATGGCCCATGTGCTTTTAGAGACATGCTGGTCTACCAAAAAAGCCACAGATTAAACTTTCACAACAgcacttatttttatgttttactctTGCACTAGTTCATATGTTGCAATGCAAGTAAATCTCTGTATGTGGGCATATGGACACAGTACTACAGCAAAGGGAGAAGAAGTTGAATTAAACTGGTAATGTTTCAGCTGAGATAGTCCcaggtgatttatttttattattttaagggaAGGTTGGATTTTCTATTGTGATTAGGAAATATTTATCTTCTCATCCACAGCCCATTTGTCACAAACTATAAGCCAAAGAGTTTTTTAAACATTAGGATTAAATATGCAAAGCTGAGGTCTTTAAGGTTTGTCAAAAGCTACTGTAGTGTAACAAAGTTTTGTGGATGTGTTTGGAATTGATCAAGCTTAGAGgcttaaaatgaaatgtctaTCAACACATCTGGACTCTGGACAGTAGCTTAGAAAACGAAGCTCTACTGattactaaaaatgtattttgatctTCAAATTGAAAACCACAAAGATTAACAAAGTCATTCTACAATCGAAACCCTACTTGCACAAACCAACAACACTTTACAGCTCCCTCAGTTGTGACTCCCAAACCCACAGCCTAATACTACTCATtataacattcaaaatatatacacattgatTACCTGTaaacacagacattaaaaataacatcacCTATTTCCTCCCACTTGTAAGCCTTCTATATAGCACTGTTAAGACCATTGCTCTGTACTTTCTGACTTGCACCTGCAAGGCTCAGTTTAGTCTTTTGGCAACTAGCACATCTCTCTGTTTGAATTTGATTCTGCTGCTGAATCTTGAAGTAGTTTTACATTAGGACACCAAGCttaattaatatacatgttCAGAAAACAAGGACAGCCAGAACCCTCCTGTGTCCATCACAAATTCATCCTTTTTTTAGTGTTTTCAAGCAccttttgcaaataaaaaatattcaatGTGCAAGCATCCCTTCACCAACAAATGTgcaatcattttctttcttgcatcaaaaaaaagaattaaactCTTGTCCCATGTTGTGTGTTTAGTCTGTGcaaaagatgcatctttttcAAGCATTTCAATCTGCCATAGTGTCATTTGATTCATTGTAAAAGCACACTAAACACTGGGTAACCAAtcttaattgaaaaacaaagggaatattaagaaattaagtaTCGTGCAGCTTTAcctaattacaaaaaacaaatcaacaaaaacaaaacaagtgacATTCTTTATCCCTAGAAATCTCATAAAAGCAGAttcaatatttcacattttctattaGATTTGGTGTGAAAAAAAATTAGTTATTCCTCATATGTTATGTGATAATACtttggcacatttattttttatttttaatgttatgtcACCCAAAACGAATATACTACAGAAAGTATTTGAATAACTGAGCACATTAAGCTGCTTAGCTATTGGTTGGGTGGACATGTAACCAGAACTAAGAAAAAGTGAAAGTGTGTACAGCTAGACTGCCCTCCTCTGAGTGCGCTTTTCATTCTCGCCAGGTTCAGGCACAGGTGGGAAGCACTAATGCAATAGAAACAGTGCATAACTGTCAGAAACCATAAAGGAAGGGAAAGTGAAGATTACTAGAGAAGAACATAGTCTGACACGTTCTTTGTTCTACTGGATTATCTCAGCCCTCAGACATGACAGCAACAGCTTCTCCCCCTTCACACTGAATTCCCTCAAAGAGCCACTTACTGGTTCACCACAACTGAtattgtacagtgcatccggaaagtattcacagcgcttcact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87982 True 2491 lncRNA 0.34 1 15522525 15525015

Neighbor

gene id symbol gene type direction distance location
AMCG00014482 NA coding upstream 44 15517871 ~ 15522481 (+)
AMCG00014481 NA coding upstream 22692 15495225 ~ 15499833 (+)
AMCG00014486 NA coding upstream 37472 15479452 ~ 15485053 (+)
AMCG00014480 med4 coding upstream 151147 15365696 ~ 15371378 (+)
AMCG00014476 NA coding upstream 186304 15332929 ~ 15336221 (+)
AMCG00014488 NA coding downstream 75144 15600159 ~ 15617165 (+)
AMCG00014489 lcp1,LOC106582249 coding downstream 105175 15630190 ~ 15654845 (+)
AMCG00014487 zc3h13,LOC105022574,LOC106573267,LOC106510916 coding downstream 131914 15656929 ~ 15671148 (+)
AMCG00014496 pdcl3,LOC106586481,LOC102788355 coding downstream 175139 15700154 ~ 15703459 (+)
AMCG00014494 NA coding downstream 190785 15715800 ~ 15725440 (+)
G70415 NA non-coding upstream 16477 15505814 ~ 15506048 (+)
G70413 NA non-coding upstream 21693 15500558 ~ 15500832 (+)
G70409 NA non-coding upstream 71257 15450778 ~ 15451268 (+)
G70378 itm2b,LOC108430053 non-coding upstream 91673 15350642 ~ 15430852 (+)
G70286 NA non-coding upstream 341705 15179845 ~ 15180820 (+)
G70496 NA non-coding downstream 202419 15727434 ~ 15728917 (+)
G70562 NA non-coding downstream 393398 15918413 ~ 15918621 (+)
G70637 NA non-coding downstream 712095 16237110 ~ 16240338 (+)
G70735 NA non-coding downstream 965396 16490411 ~ 16491118 (+)
G70776 NA non-coding downstream 1205863 16730878 ~ 16733637 (+)
AMCG00014470 NA other upstream 280192 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 1165657 14302447 ~ 14356868 (+)
AMCG00014456 NA other upstream 1317511 14189564 ~ 14205014 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 1833337 13655238 ~ 13689188 (+)
AMCG00014407 LOC107725344 other upstream 2270793 13246309 ~ 13251732 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 150616 15675631 ~ 15685899 (+)
AMCG00014508 NA other downstream 604464 16129479 ~ 16139032 (+)
AMCG00014525 NA other downstream 940606 16465621 ~ 16469209 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 1839783 17364798 ~ 17487050 (+)
G71004 NA other downstream 2746839 18271854 ~ 18274360 (+)

Expression


Co-expression Network