G70420


Basic Information

Item Value
gene id G70420
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15522520 ~ 15525014 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU87985
gtgaagcgctgtgaatactttccggatgcactgtacaataTCAGTTGTGGTGAACCAGTAAGTGGCTCTTTGAGGGAATTCAGTGTGAAGGGGGAGAAGCTGTTGCTGTCATGTCTGAGGGCTGAGATAATCCAGTAGAACAAAGAACGTGTCAGACTATGTTCTTCTCTAGTAATCTTCACTTTCCCTTCCTTTATGGTTTCTGACAGTTATGCACTGTTTCTATTGCATTAGTGCTTCCCACCTGTGCCTGAACCTGGCGAGAATGAAAAGCGCACTCAGAGGAGGGCAGTCTAGCTGTACACACTTTCACTTTTTCTTAGTTCTGGTTACATGTCCACCCAACCAATAGCTAAGCAGCTTAATGTGCTCAGTTATTCAAATACTTTCTGTAGTATATTCGTTTTGGGTgacataacattaaaaataaaaaataaatgtgccaaaGTATTATCACATAACATATGAGGAATAACTAATTTTTTTTCACACCAAATCtaatagaaaatgtgaaatattgaaTCTGCTTTTATGAGATTTCTAGGGATAAAGAATgtcacttgttttgtttttgttgatttgttttttgtaattaggTAAAGCTGCACGAtacttaatttcttaatattccctttgtttttcaattaagaTTGGTTACCCAGTGTTTAGTGTGCTTTTACAATGAATCAAATGACACTATGGCAGATTGAAATGCTTgaaaaagatgcatcttttgCACAGACTAAACACACAACATGGGACAAGagtttaattcttttttttgatgcaagaaagaaaatgattgcACATTTGTTGGTGAAGGGATGCTTGCACattgaatattttttatttgcaaaaggTGCTTGAAAACACTAAAAAAAGGATGAATTTGTGATGGACACAGGAGGGTTCTGGCTGTCCTTGTTTTCTGaacatgtatattaattaaGCTTGGTGTCCTAATGTAAAACTACTTCAAGATTCAGCAGCAGAATCAAATTCAAACAGAGAGATGTGCTAGTTGCCAAAAGACTAAACTGAGCCTTGCAGGTGCAAGTCAGAAAGTACAGAGCAATGGTCTTAACAGTGCTATATAGAAGGCTTACAAGTGGGAGGAAATAGgtgatgttatttttaatgtctgtgtttACAGGTAatcaatgtgtatatattttgaatgttataATGAGTAGTATTAGGCTGTGGGTTTGGGAGTCACAACTGAGGGAGCTGTAAAGTGTTGTTGGTTTGTGCAAGTAGGGTTTCGATTGTAGAATGACTTTGTTAATCTTTGTGGTTTTCAATTTGAagatcaaaatacatttttagtaatCAGTAGAGCTTCGTTTTCTAAGCTACTGTCCAGAGTCCAGATGTGTTGAtagacatttcattttaagcCTCTAAGCTTGATCAATTCCAAACACATCCACAAAACTTTGTTACACTACAGTAGCTTTTGACAAACCTTAAAGACCTCAGCTTTGCATATTTAATCCTAATGTTTAAAAAACTCTTTGGCTTATAGTTTGTGACAAATGGGCTGTGGATGAGAAGATAAATATTTCCTAATCACAATAGAAAATCCAACCTtcccttaaaataataaaaataaatcacctgGGACTATCTCAGCTGAAACATTACCAGTTTAATTCAACTTCTTCTCCCTTTGCTGTAGTACTGTGTCCATATGCCCACATACAGAGATTTACTTGCATTGCAACATATGAACTAGTGCAagagtaaaacataaaaataagtgcTGTTGTGAAAGTTTAATCTGTGGCTTTTTTGGTAGACCAGCATGTCTCTAAAAGCACATGGGCCATATCTTAATGAATGTCAGACCCCGTCACAACCCAGAGCACATGTACAATCACTACAGTACAGACTTTgagtttgaaatgcattgtagACTAGCAGttgatttacatatttaacataatttgAAACCTGTACATTATGGCAGCTAGCATGTTTGATGTAATCTGCActttaaagtttatttattactttcttGCGACGTCTAGGAATTCtgatgtattcatattttggtAACCATCAAATCCAAACGTTTCTTAACTACGATTTCACATTTCTATTAATCATACATTTACCAAATTTTTGTATCAACCACACAAATGCTATCTGCTGAATCTTGAGTAGGGTGTTTTATTCTAGTTTGCTCTAATGTAGATAAAACATGACAagttgtactgttttttttttttttgtttgtttttttacaaatgaatattattttgtattaatgggTTTTTATGTTTAAAGTCAGATGTACCATAAATAAagtatgttaaatattttgttatacgGCTTTTGTGTATAATGAGTATGGCTTTTAGGAATTTCAGATGTTTATACAGCACTCGTTCTttcaatgtattaaacatgattCGTTTGTACCATCGCCTTAACaactgtaaataatgtatatagtacaaatattactttatttaacagTAAACGTCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87985 True 2495 lncRNA 0.34 1 15522520 15525014

Neighbor

gene id symbol gene type direction distance location
AMCG00014485 nudt15 coding downstream 151395 15370180 ~ 15371125 (-)
AMCG00014484 NA coding downstream 159590 15350804 ~ 15362930 (-)
AMCG00014483 NA coding downstream 174047 15336207 ~ 15348473 (-)
AMCG00014477 NA coding downstream 192608 15310175 ~ 15329912 (-)
AMCG00014478 NA coding downstream 218615 15302342 ~ 15303905 (-)
AMCG00014492 NA coding upstream 1714 15526728 ~ 15564001 (-)
AMCG00014493 NA coding upstream 65975 15590989 ~ 15595573 (-)
AMCG00014491 NA coding upstream 94148 15619162 ~ 15627108 (-)
AMCG00014499 cnot11,LOC106582250 coding upstream 148012 15673026 ~ 15676127 (-)
AMCG00014498 NA coding upstream 154781 15679795 ~ 15697711 (-)
G70425 NA non-coding downstream 16009 15506304 ~ 15506511 (-)
G70407 NA non-coding downstream 135820 15383633 ~ 15386700 (-)
G70402 sucla2,LOC107705569,LOC107584790 non-coding downstream 145746 15374238 ~ 15376774 (-)
G70346 NA non-coding downstream 280187 15238803 ~ 15242333 (-)
G70315 NA non-coding downstream 462746 15045852 ~ 15059774 (-)
G70458 NA non-coding upstream 118605 15643619 ~ 15644914 (-)
G70491 pdcl3,LOC106586481,LOC102788355,LOC106582251 non-coding upstream 175194 15700208 ~ 15703314 (-)
G70660 NA non-coding upstream 687530 16212544 ~ 16214127 (-)
G70679 NA non-coding upstream 756671 16281685 ~ 16281899 (-)
G70689 NA non-coding upstream 841110 16366124 ~ 16369464 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 2388769 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 3854983 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 4385434 11125029 ~ 11137086 (-)
G69537 NA other downstream 4724373 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 5461290 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 1197059 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 1921854 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 2064253 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 2465637 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 3676789 19201803 ~ 19203567 (-)

Expression


Co-expression Network