G70491 (pdcl3,LOC106586481,LOC102788355,LOC106582251)


Basic Information

Item Value
gene id G70491
gene name pdcl3,LOC106586481,LOC102788355,LOC106582251
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15700208 ~ 15703314 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU88073
AATCATATTAAGAGTATTTGTTTGCTTATTCAATAAAAGACATGTTGCTTGAAGCTATTTAcagcaaaaaatgaaaaacatgtattttcttgcCTGAGCACATTTCTGaaacaccaataataatacaaataatggtgCAAATATTCTACCTTTTTTATTTGGATTACCTGATcttcatttttatgttgaagAATTAAAAATCACATACCAGAGAAGAATGgtattatttacagtattattattttaatagtaacattagttttttcttaaaaagacattgatcttaaaaaaatacacaggatTTCCAAATATGACATGATGTTTCAGCTCATGAGGTCAGTGTGAAATCCTCCCATCCCTCATAACATCGATGTGCATCCTATCCAGAAGGAAGACCCTGGTAGACGCCTCTCTTCGGAGACAAGGCCAGTCCGTGGAGAGTGTCTAGGTGATGCGGATACACCACACAGaaggaaaacatgcaaaatagGTCAACATTGTACTGGGTGGAAACACCAACGATGGGCTTCAGAGCCTTCAGTAACTAATCTTCGTCTGAGTCGATGTCCTTTCTTGTTGGGAGAGAGCATCTGATTGATGACATCAACTTATCCTCAATCTGTTTCCTAGGATTTTCCTCCAAGTCTGTCTTCACAGCCCCAGCTTCTGAAAGTTTCCACTCCAGTtcttctatttttaaattcatgccCCCAAAGAGCAGTGGTCCAATAAACTGTGCCCTCATATCACCTTCAAGATACACAAATATAGTGGGCAGATTCCTGTCAGGGTAATTGGGTATACAGGTTGTGGAGATTGACTTGAGAAATTTTGTCTGTGGGAATTTTCTTGCAAGCTCAGTTAGGTGCTGATTTATTAAGGTGCAGAGAGGGatgCCTGTTTTATAAAGATGCAGCACAACCCAGATCCCCTCGCCAGCTTTGTTTACTTCTTGTACATAATCCTGACCAGAGATCTCCACTAACTctccaaatgcatttttgatCTGCTTAGCTTTCCACTCAGCTAGCCTTTGTTgtctgaaaatattgaaaacaggaaaattaGAAAAGTTAATCCTTAAATAcagactgaaaa
>TU88074
ccttctatttttaaattcatgccCCCAAAGAGCAGTGGTCCAATAAACTGTGCCCTCATATCACCTTCAAGATACACAAATATAGTGGGCAGATTCCTGTCAGGGTAATTGGGTATACAGGTTGTGGAGATTGACTTGAGAAATTTTGTCTGTGGGAATTTTCTTGCAAGCTCAGTTAGGTGCTGATTTATTAAGGTGCAGAGAGGGatgCCTGTTTTATAAAGATGCAGCACAACCCAGATCCCCTCGCCAGCTTTGTTTACTTCTTGTACATAATCCTGACCAGAGATCTCCACTAACTctccaaatgcatttttgatCTGCTTAGCTTTCCACTCAGCTAGCCTTTGTTgtCTGTACATCTCAATGGCTCGCTCGTCCTCATCATTGAACTCATCTTCGTTTTCCTCAAGCTCATCCAGAGTCATGTCCTCATAGGTTTTCACCACTGACTGCTGCTGTGACACATGCTCCtcatcttcctcttcctcaACCGGCTTCTCCTTTGGAGGCAGGATGCCCTTCCTCCGCAAGATGTCATTCCACTCCGTGTCTGCATTTGGATCCtgcattttctctttctatcAGAAGCTCCGAATGAAATCACGTTGACACCCC

Function

symbol description
pdcl3 Involved in positive regulation of gene expression. Acts upstream of or within angiogenesis. Predicted to be located in cytoplasm. Orthologous to several human genes including PDCL3 (phosducin like 3).

NR:

description
PREDICTED: phosducin-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88073 True 1098 lncRNA 0.38 3 15701495 15703314
TU88074 False 618 lncRNA 0.45 5 15700208 15702336

Neighbor

gene id symbol gene type direction distance location
AMCG00014498 NA coding downstream 2497 15679795 ~ 15697711 (-)
AMCG00014499 cnot11,LOC106582250 coding downstream 24081 15673026 ~ 15676127 (-)
AMCG00014491 NA coding downstream 73100 15619162 ~ 15627108 (-)
AMCG00014493 NA coding downstream 104635 15590989 ~ 15595573 (-)
AMCG00014492 NA coding downstream 136207 15526728 ~ 15564001 (-)
AMCG00014497 NA coding upstream 46020 15749334 ~ 15751165 (-)
AMCG00014511 rdx,LOC108434698,LOC107757412,LOC107588847,LOC108258936 coding upstream 270039 15973353 ~ 15993156 (-)
AMCG00014510 NA coding upstream 337919 16041233 ~ 16067562 (-)
AMCG00014509 NA coding upstream 451944 16155258 ~ 16164120 (-)
AMCG00014515 pspc1,LOC108258933 coding upstream 528251 16231565 ~ 16250776 (-)
G70458 NA non-coding downstream 55294 15643619 ~ 15644914 (-)
G70420 NA non-coding downstream 175194 15522520 ~ 15525014 (-)
G70425 NA non-coding downstream 193697 15506304 ~ 15506511 (-)
G70407 NA non-coding downstream 313508 15383633 ~ 15386700 (-)
G70402 sucla2,LOC107705569,LOC107584790 non-coding downstream 323434 15374238 ~ 15376774 (-)
G70660 NA non-coding upstream 509230 16212544 ~ 16214127 (-)
G70679 NA non-coding upstream 578371 16281685 ~ 16281899 (-)
G70689 NA non-coding upstream 662810 16366124 ~ 16369464 (-)
G70731 NA non-coding upstream 762465 16465779 ~ 16469228 (-)
G70876 NA non-coding upstream 1581005 17284319 ~ 17284576 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 2566457 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 4032671 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 4563122 11125029 ~ 11137086 (-)
G69537 NA other downstream 4902061 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 5638978 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 1018759 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 1743554 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 1885953 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 2287337 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 3498489 19201803 ~ 19203567 (-)

Expression


Co-expression Network