G70883


Basic Information

Item Value
gene id G70883
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17316253 ~ 17317556 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU88575
CTTGAGAGTGTTGTTGGTTTCTTCGTTTTTTGCAGTGGCAGACAAGTAGGACAGAGATCACCACAAGTATCAGGGCTCCTATTCCAGCAATAACAGCAATAAATGTCCAAAAATCCAGGCCAAGAATCTTATCCTCTTTATTGTCTGATctacacatttcatttcagtttcatttttctCCACACTGGCACAATTCTTTGCAATGCAAGTAATCTTAGGAGAATGTGCATATTGTTCTTTTACATTGTAAGTCACATTTCCACTGGATATATTCAGagattttccatttaattccaATTCAAGAGTCCCTTCATCAATGCTTCTGGCCCCACAGGATATTGTTTTTGTACTGCAGTCGATTGTCAAGTATGGCTTTGATACTGATT

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04640 Hematopoietic cell lineage
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
TU88575 True 386 lncRNA 0.38 2 17316253 17317556

Neighbor

gene id symbol gene type direction distance location
AMCG00014536 gdap2,LOC104943794,LOC104954255 coding upstream 550701 16737483 ~ 16765552 (+)
AMCG00014538 NA coding upstream 584384 16722198 ~ 16731869 (+)
AMCG00014537 NA coding upstream 596516 16692012 ~ 16719737 (+)
AMCG00014535 tbx15,LOC107712261,LOC107724509 coding upstream 704592 16583824 ~ 16611661 (+)
AMCG00014531 wars2,LOC106531917 coding upstream 738096 16557564 ~ 16578157 (+)
AMCG00014552 NA coding downstream 11357 17328913 ~ 17332815 (+)
AMCG00014560 NA coding downstream 462009 17779565 ~ 17780081 (+)
AMCG00014565 NA coding downstream 632004 17949560 ~ 18029896 (+)
AMCG00014564 NA coding downstream 720552 18038108 ~ 18067182 (+)
AMCG00014563 klf5,LOC107757638,LOC102777034 coding downstream 752978 18070534 ~ 18080340 (+)
G70865 NA non-coding upstream 62582 17250319 ~ 17253671 (+)
G70846 NA non-coding upstream 143191 17132063 ~ 17173062 (+)
G70835 NA non-coding upstream 218289 17028960 ~ 17097964 (+)
G70776 NA non-coding upstream 582616 16730878 ~ 16733637 (+)
G70735 NA non-coding upstream 825135 16490411 ~ 16491118 (+)
G70897 NA non-coding downstream 31880 17349436 ~ 17350952 (+)
G70908 NA non-coding downstream 172270 17489826 ~ 17490607 (+)
G70938 LOC107575789,LOC100846954 non-coding downstream 333215 17650771 ~ 17651002 (+)
G71036 kctd12 non-coding downstream 1147663 18465219 ~ 18468335 (+)
G71038 NA non-coding downstream 1159487 18477043 ~ 18478028 (+)
AMCG00014525 NA other upstream 847044 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 1177221 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 1630354 15675631 ~ 15685899 (+)
AMCG00014470 NA other upstream 2073920 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 2959385 14302447 ~ 14356868 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 47242 17364798 ~ 17487050 (+)
G71004 NA other downstream 954298 18271854 ~ 18274360 (+)
G71525 NA other downstream 5537786 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 9587321 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 10517947 27835503 ~ 27841871 (+)

Expression


Co-expression Network