G70938 (LOC107575789,LOC100846954)


Basic Information

Item Value
gene id G70938
gene name LOC107575789,LOC100846954
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17650771 ~ 17651002 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU88649
tggagaactgggtgaaagtgttgtggtcagatgagaccaaaatcgagctctttggcatcaactcaactcgccgtgtttggaggaggaggaatgaccccaagaacaccatccccaccgtcaaacatggaggtggaaacattatgctttgggggtgtttttctgctaaggggacaggacaactgcatcGCATCAAaaggacgatggacggggccatgtaccgtcaaatcttggg

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88649 True 232 lncRNA 0.51 1 17650771 17651002

Neighbor

gene id symbol gene type direction distance location
AMCG00014552 NA coding upstream 317956 17328913 ~ 17332815 (+)
AMCG00014536 gdap2,LOC104943794,LOC104954255 coding upstream 885219 16737483 ~ 16765552 (+)
AMCG00014538 NA coding upstream 918902 16722198 ~ 16731869 (+)
AMCG00014537 NA coding upstream 931034 16692012 ~ 16719737 (+)
AMCG00014535 tbx15,LOC107712261,LOC107724509 coding upstream 1039110 16583824 ~ 16611661 (+)
AMCG00014560 NA coding downstream 128563 17779565 ~ 17780081 (+)
AMCG00014565 NA coding downstream 298558 17949560 ~ 18029896 (+)
AMCG00014564 NA coding downstream 387106 18038108 ~ 18067182 (+)
AMCG00014563 klf5,LOC107757638,LOC102777034 coding downstream 419532 18070534 ~ 18080340 (+)
AMCG00014569 NA coding downstream 673268 18324270 ~ 18332414 (+)
G70908 NA non-coding upstream 160164 17489826 ~ 17490607 (+)
G70897 NA non-coding upstream 299819 17349436 ~ 17350952 (+)
G70883 NA non-coding upstream 333215 17316253 ~ 17317556 (+)
G70865 NA non-coding upstream 397100 17250319 ~ 17253671 (+)
G70846 NA non-coding upstream 477709 17132063 ~ 17173062 (+)
G71036 kctd12 non-coding downstream 814217 18465219 ~ 18468335 (+)
G71038 NA non-coding downstream 826041 18477043 ~ 18478028 (+)
G71136 NA non-coding downstream 1037546 18688548 ~ 18692633 (+)
G71183 NA non-coding downstream 1250223 18901225 ~ 18902161 (+)
G71237 NA non-coding downstream 1396956 19047958 ~ 19048172 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 163721 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 1181562 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 1511739 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 1964872 15675631 ~ 15685899 (+)
AMCG00014470 NA other upstream 2408438 15221914 ~ 15242333 (+)
G71004 NA other downstream 620852 18271854 ~ 18274360 (+)
G71525 NA other downstream 5204340 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 9253875 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 10184501 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 10217701 27868703 ~ 27879800 (+)

Expression


Co-expression Network