G71038


Basic Information

Item Value
gene id G71038
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18477043 ~ 18478028 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU88779
ACCCGGAAAAATAACAGCATCCTGTTCACTGACGTCCAGCTCAGCGAGGTCCTGAATATTCCCTCGTGCCAGGCGGGCACTTTCTACCAGAACGTTTCTCTTCTCCTCTGTTGGGCTGCCCTTCACATGGTCAACTACATGCATCTGGTCAATATTAGGAGCAAACATTTTAACCTTAAAATGGGATCAATCCTGATGTTGAAGACTTCATTCCCTCAAAATACAGAAGTGAATTCTCGAATACAACCCGTGTGTCTGTGACAGGTTTCATGATGGAGAAGGGAAGTCATGTGACCCCTGCAGTGTGACGCTCCTGCTCTCCGCTGATTGGATATTGAATAAATCAGACACCGGAGAAGCCCGACACCATTTCAACACAATTTACCTCCAATACAGACGTACCCCTAAACAAACTCAAGTCATGCAAAATGCAAACTTATTTCACAGCCCAGCTTCCTCCACGCAGTGTTGCTGTACATTTTAACATCGCACTGCATAACAGCATGTGGATAAAAGTTCATAACGCGAAAAAGAAAGGGCTCACATGAGAAACACGCAGACGACAACATCGGTGTGACTACGATTAAAACAATTAGCTGAACGATGACCGGATCGCGATTGGATTTACAAGGAAGTAACCGGAGCCCAAGTGGCCGTCACTCACAGTCGCGCCGCCCCGGCTCAGATGCACCAGCGCCGCCGAGGCCTCATGGATCTCACTGCCGTCAAACACCCCACAGCCGGCCAGCACCACCGCCACCCGCTTCGCCATGTCCGCCTTCAATGTGGTTTATAAGGCTGTCGAGTGGAGAAGAAACGACGATGAGGGGCGGGGGGCTGAGCTGGTGTGCTTTTATAGCCTGCAGTAATGACACCACTGCGCCCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88779 True 888 lncRNA 0.50 2 18477043 18478028

Neighbor

gene id symbol gene type direction distance location
AMCG00014573 NA coding upstream 1859 18470551 ~ 18475184 (+)
AMCG00014574 NA coding upstream 81443 18374644 ~ 18395600 (+)
AMCG00014569 NA coding upstream 144629 18324270 ~ 18332414 (+)
AMCG00014563 klf5,LOC107757638,LOC102777034 coding upstream 396703 18070534 ~ 18080340 (+)
AMCG00014564 NA coding upstream 409861 18038108 ~ 18067182 (+)
AMCG00014575 NA coding downstream 381 18478409 ~ 18480032 (+)
AMCG00014583 NA coding downstream 108406 18586434 ~ 18609444 (+)
AMCG00014580 NA coding downstream 132532 18610560 ~ 18624589 (+)
AMCG00014582 wbp4 coding downstream 148531 18626559 ~ 18632690 (+)
AMCG00014586 NA coding downstream 158678 18636706 ~ 18638604 (+)
G71036 kctd12 non-coding upstream 8708 18465219 ~ 18468335 (+)
G70938 LOC107575789,LOC100846954 non-coding upstream 826041 17650771 ~ 17651002 (+)
G70908 NA non-coding upstream 986436 17489826 ~ 17490607 (+)
G70897 NA non-coding upstream 1126091 17349436 ~ 17350952 (+)
G70883 NA non-coding upstream 1159487 17316253 ~ 17317556 (+)
G71136 NA non-coding downstream 210520 18688548 ~ 18692633 (+)
G71183 NA non-coding downstream 423197 18901225 ~ 18902161 (+)
G71237 NA non-coding downstream 569930 19047958 ~ 19048172 (+)
G71283 tpt1,LOC106582181 non-coding downstream 740289 19218317 ~ 19222919 (+)
G71362 NA non-coding downstream 1446874 19924902 ~ 19925198 (+)
G71004 NA other upstream 202683 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 989993 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 2007834 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 2338011 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 2791144 15675631 ~ 15685899 (+)
G71525 NA other downstream 4377314 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 8426849 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 9357475 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 9390675 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 9824345 28302373 ~ 28304073 (+)

Expression


Co-expression Network