G71157


Basic Information

Item Value
gene id G71157
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18668801 ~ 18669655 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU88975
GGTCCTGATCAAGTCAATCCCATGACATGATATGCACTTTGTCATTTGTGTTGCACTGTGTTAAGCTTTTAAACATGAACACCCCCCTAACCAGCTGATTGCAGACGCAGACAGGTGGCCTGTAGGACCCATAGGCACTTCACGGCCATGTGCGCTAGCTAACACAGCCGCAGCATCTCACTCGGCCGTCCTTACTCTCCGAGTCGCTGATGCCGCTGTCGCTGACGCTGGCGCTGCTCCTCCTCTTCATGGTCTTCAGGTGCTCATCGTATCTGAAATGCCTTTTTTCCACAGGAGAGGAGAAGTCTTCAATAACCGCGTCAAACTCGCACAAAACTGCGCTCAGGTCCTCATCTCCGTCCAGAAAGAGACCTTACTTTGCGGTTTCATCTTAGGAGACTTCATGTGATCTGTTTGTTGACGGTTGGATATATCCAATACAGAAAGACGAGATCAAGACACTCCGCGGACAGACTGTGCAGTTTCACTGTGTGCTGCGGCTGAGCGCCC

Function

GO:

id name namespace
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component

KEGG:

id description
ko04020 Calcium signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU88975 True 510 lncRNA 0.51 2 18668801 18669655

Neighbor

gene id symbol gene type direction distance location
AMCG00014585 NA coding downstream 24131 18639812 ~ 18644670 (-)
AMCG00014579 mycbp2 coding downstream 111513 18489550 ~ 18557288 (-)
AMCG00014576 fbxl3,fbxl3a,LOC107703114 coding downstream 181521 18485261 ~ 18487280 (-)
AMCG00014577 zgc:162944,LOC108424409,LOC103034916,LOC107705163,LOC107658212,LOC108266838,LOC107597427 coding downstream 190879 18475543 ~ 18477922 (-)
AMCG00014578 kctd12 coding downstream 200519 18467410 ~ 18468282 (-)
AMCG00014588 vwa8 coding upstream 26420 18696075 ~ 18709409 (-)
AMCG00014589 vwa8,LOC107579031 coding upstream 51150 18720805 ~ 18766660 (-)
AMCG00014590 vwa8 coding upstream 107121 18776776 ~ 18777608 (-)
AMCG00014593 NA coding upstream 262482 18932137 ~ 18946921 (-)
AMCG00014597 NA coding upstream 301781 18971436 ~ 18999017 (-)
G71133 NA non-coding downstream 4170 18664264 ~ 18664631 (-)
G71016 NA non-coding downstream 337701 18329197 ~ 18331100 (-)
G70954 NA non-coding downstream 664778 18003810 ~ 18004023 (-)
G70898 NA non-coding downstream 1317829 17349436 ~ 17350972 (-)
G70876 NA non-coding downstream 1384225 17284319 ~ 17284576 (-)
G71160 NA non-coding upstream 16843 18686498 ~ 18687346 (-)
G71174 NA non-coding upstream 181069 18850724 ~ 18851111 (-)
G71179 NA non-coding upstream 204950 18874605 ~ 18878253 (-)
G71284 NA non-coding upstream 521730 19191385 ~ 19191632 (-)
G71290 NA non-coding upstream 542989 19212644 ~ 19214404 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 646706 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 1047650 17589267 ~ 17621151 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 1206511 17446868 ~ 17462290 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 1930924 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 5535050 13087608 ~ 13133751 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 532148 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 548067 19217722 ~ 19225230 (-)
AMCG00014630 LOC107672672 other upstream 3556269 22225924 ~ 22244915 (-)
AMCG00014693 NA other upstream 8615765 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 8666040 27335695 ~ 27369527 (-)

Expression


Co-expression Network