G71179


Basic Information

Item Value
gene id G71179
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18874605 ~ 18878253 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU89007
TTTATTCTTAGCCACAgataaaacaattaacaacatAGTGCAACTGGAAGCTTATAATCTGGAAACTACACAGCAATTGTACTAGAGGACAAGTTTATTCACTTTTATAACTTACataaattcattacattttttggcaagattatataaatatgcaggaaaaaatatatgtcaGTATACATCTTGTTGGTCAGCTACAATGTGTGATAGGATGAGAATAATACTGCACAAGTAACAAAACTATGTTTAAATTGTTAAGTCATTTATGTATGACACATTCAGTTTGTTAAATAACACTAATAGCAAATTTTTCCAAAGATTGGAATGTACACAAATggtacataaaataaagtgacTAAGTATAAGAGGACTAAACATAAATGCCTCCTGTTAAACATACAGCACAAATAACCCTTCAATTACACTCCACAAGTTTGGAACCAACAGGTAACTATTCTGTGGGATTAGTTTCTACAGTATCTCCACCCAcatgcatattttctttattcaaataattcacATACATCAAAAAAGAAGTTCAAATGGATctgttttaagtaatttaattatcaatgtatttctttagGTCCAGTAATATTCCTTACTGGTTATGTGTTGAATTTGTTTCGTGTTGAAAATCTTGGCTTTTATACTTCAAGAGTGTATATTCCGAATCATGGAAAGGATTACGAAAAAGGATCTCAAGTCACGTAATATGGTGTTTGGATTAAAACTAATGTCCACTAGCTGTGTCAGAATTAAtttaaggaaaatgtaaataataattaaacagaaatcaTTAATTTTCTTCAGATGTAAGTTAAAATAGTAATTGCAGTTAATCAATGGAATATACTGATAAACCATTcatataatacatgttttcttcaccagagtattataaaaatataaatttaatcaTTCTCCTAAAGCAGGTCATTGATTGAAAAAGCATGCTTCACTAAATATATACTAGGTGGAAATGAGCTGCTTTAGCAAAGTCTTCACTTCTTTAAGGCAATTAATATGTTTCCTGCCAGCTAGAAATTGGGTTCACAGATGCAGGCAAATAACTGTTATTCCATTTTAACACTCTGGTGCATATATCACTAAGGAATAACTTCTGACATGAAAAAGGGCTTTTAAAAGCCTTTACATAGCATTATGCATTAACATTCCATCCATGGCGGTTGAGTCTCAGAAATGTTCCATCAAACACAGCCAAGGTCTCTCAAGACTGATATGATGGTTTGCCCAATTTAAACTACATCAGCCTTTATTAAGATACATATCTGTAAATGTCCAGATTCATGGATCAGTtgcgaaaaaataaaaaaacaaaaaacgatttaaattattttgaaacctGCTCTTAATAACATTACATAGATGTGAAAACCCAAATATTCAATATTGAATGTATTAActtgtatttgtacttttggaaaaatactgacctcattttaaacaaactggtTTGAGCATTTTTACCAGCGTAACATCTGACCCTATGGCTACTTGACAATTTCATAATGTGTTGGCTTCAACTCAAGCTATGACACATAGTATTGGGTCAGAAGTCAAAACTGTTCTGTAGATCTCACTGCTGCAGCACATGGACTGAGGCCAATTTACTTCAAATCACACagcaagaaatgtaatacaactgcaaaatgtgttaatttgctTCAGCAAGAAATACAAGTACAAAGATTTCATATTCTTTCTTTGGTTCAAACATCAACATCAGAATTAGGTATGTACATCTCTCACAAATGTTAGTATCCCCTAAATGCATAATATTCTCTAGAAACCAAAAAGTGCATTCTCAGACTATCCATCTACCCCCACTATACTATTTCAACTACAGAATTATATAGGTAAGATTTATGAAGCCATTGCAGTAACCAAACTTAATTTGGCTGCAAAATTCCTGTCCCTCAAGACGGCCTTTTAGAAGTAACTTACTGGAGTGtatgatgacacacaaaacaagtTATGTTAGATGAGTATGAACTCATTGAGGTCTGATGATGCAGACTCTAGTTGTGTCACGACTACTACGGTATTTCTGTATCACTAGAGACCACTTCCAGTGTGACTTGATGGATAAAACACAGTCATAATGGAAATTCTACGCTTGCTGCAGTCTAAGCTTATTCAAATGAAATGATGTAGTGTGTGCACTAATTTAACTATGGCAAAGTTAGACAAACGGTACACAGTGTTTCAGTGCATCTATGGACTACtgcaataatcataatcattccATCATTTTGCAGAAAATGCATTGAATCAACCTTGAATATAGAAATGTACATTCAAGTTAAATTTCTACAGTTTAATTTAACACTACTGATTTGCAGTGTACTAATGGTTGAGATACAGTCTACCCTTCTTAAAGGCCAAGAAAGCATCTCTACGAAATAATTTTACTTCACATGCATTGCCCaagttttgtaaatacattttaatatatatgaatctTGTATTAcgattttaagaatatacaattttcttttcatcctGCCTTTTGTGGTTCATgtaagacaaattaaaggaatggTCTTGATACAGTGAAATCAAATTGCATGCTGTACTTACAGACGTAAGTTACAATCTTGTTTTTGCAGGGCTTTTTCAATAACAAGATCTTTAAAGCATCAGAAAGTGAGGAATAAATACACAGGTTTGTTGTTAAAGAACAGAAGTCAGGATTCTGTGATTTTATCAAGCCAGAAATCTTTGGCTCAGAATGTAATCTATATGTTTACACTGCATGTAGTCCAACCAAATCAATTCTGATTTTGAATATCTGAATAACTTGTGTTTCACTGAAATATGAAATCATTGCAATGCATATGaggtaaacatttgtttttaacttcccagaaatattaattatagTAATCTCAATTGACCTGAAATAAAGAGTTTTTGCTGCACCTTAGATTCACAGAAATACAAAGCTAAATAAAAAGCCTGAGGCTGGTCCCTGACATGTTAAAACCATACTAAGGGGGAGAGTAAGCAATACCAGTGTGTTGATGAATGGCTTACTTAAGCAATGGGGTTTCCCCTGGTGAAAATACTTACTTTTATGGTGCTGCctcaattattttacaataacaaGAACAAGGCATAGATCTATAATGCACAAATGGCcacaaatgtttatataatgatGTAGATATGCAGACGATTATAAAAAAGCACCTTCAGTCACGCGTACGATGCACACACATCACTGAAAGCAAATAGTAGTGGCTACAAAGGCTGCTCCCTCTATGTAAGCACTGTGTAACTGCTGAAGCAATACCAATTAGGACAGAAACAGTCCATTGACTAGGTCTCTACTTTTGGCAAGACGCACATCACTGCTGAGTGAGTGCTCAGTGAGTTAATGTTGAAAGTGTTCATTTCAAGAACTGTTTCACTtcacaattataaaaaaaaaaaaaaaaaaaaaaactgcagacaaaTTGGTATCTCCCAGATCTGCATCTAAGCATACTCTAGCAGCCACTGAAAGAAAGGTTTATGAAAGTGATTGTCTGCCTCCTGCTCCACCTCTTCACAGTACTTTAAGACCGTCTGCAGTAGATCTCCCACCTTCCAATCTCTTTCCTTGGCTCTTTTCAACACTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89007 True 3649 lncRNA 0.34 1 18874605 18878253

Neighbor

gene id symbol gene type direction distance location
AMCG00014590 vwa8 coding downstream 96997 18776776 ~ 18777608 (-)
AMCG00014589 vwa8,LOC107579031 coding downstream 107945 18720805 ~ 18766660 (-)
AMCG00014588 vwa8 coding downstream 165196 18696075 ~ 18709409 (-)
AMCG00014585 NA coding downstream 229935 18639812 ~ 18644670 (-)
AMCG00014579 mycbp2 coding downstream 317317 18489550 ~ 18557288 (-)
AMCG00014593 NA coding upstream 53884 18932137 ~ 18946921 (-)
AMCG00014597 NA coding upstream 93183 18971436 ~ 18999017 (-)
AMCG00014601 tsc22d1,LOC107551985,LOC107713726,LOC107688650,LOC107748883 coding upstream 236114 19114367 ~ 19122826 (-)
AMCG00014602 tsc22d1,LOC107713726,LOC107551985,LOC107748883,LOC107576221 coding upstream 281676 19159929 ~ 19162787 (-)
AMCG00014600 NA coding upstream 296429 19174682 ~ 19184193 (-)
G71174 NA non-coding downstream 23494 18850724 ~ 18851111 (-)
G71160 NA non-coding downstream 187259 18686498 ~ 18687346 (-)
G71157 NA non-coding downstream 204950 18668801 ~ 18669655 (-)
G71133 NA non-coding downstream 209974 18664264 ~ 18664631 (-)
G71016 NA non-coding downstream 543505 18329197 ~ 18331100 (-)
G71284 NA non-coding upstream 313132 19191385 ~ 19191632 (-)
G71290 NA non-coding upstream 334391 19212644 ~ 19214404 (-)
G71291 NA non-coding upstream 336361 19214614 ~ 19215246 (-)
G71292 NA non-coding upstream 337960 19216213 ~ 19217037 (-)
G71315 NA non-coding upstream 374321 19252574 ~ 19255934 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 852510 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 1253454 17589267 ~ 17621151 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 1412315 17446868 ~ 17462290 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 2136728 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 5740854 13087608 ~ 13133751 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 323550 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 339469 19217722 ~ 19225230 (-)
AMCG00014630 LOC107672672 other upstream 3347671 22225924 ~ 22244915 (-)
AMCG00014693 NA other upstream 8407167 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 8457442 27335695 ~ 27369527 (-)

Expression


Co-expression Network