G71283 (tpt1,LOC106582181)


Basic Information

Item Value
gene id G71283
gene name tpt1,LOC106582181
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19218317 ~ 19222919 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU89148
AGATCATGAGACATTTTGTCCAGtggtttattctgtttttacaAGTCATGGCAGTAGCTGAACAATcctgggggagagggagataCATCAGATGCAGCTGAATACATAGAGCAAACCATGATGCTGGAGATGTTTTTTGAACCGATGAATTGAAAACCCAAATAAAAAGAGGACTCCAATTGAGATTTTCTTGCTCTGAAGGCATTTCCATTTAGAAGAAGTTTCATACTGCAACACTCACATCAGACAATTTGATACCTGTTGATAaaaatgttctgtaaaatgtCCTGATGGTCTCCGCCATTTACAATTCAGGTCATGAAGACTGGTGGTTGTCTGAGGGccaaaaagtgttttattttaaatttgacattacaatttaaaacaatgttttcattccaaacaaaagaacaaaatgaaGTCCAGTCCATATTCTCGTCTAAATCTTGATGAGAAGCAGCAGCCGGTTAGGATGGGTGGGGAGCAAAACGTGATATCCTGACGTGTTACTGAAAACAAgtagagggagaaagagaattgtaaatcagaataaaacatttcagtgcattggcttcaaaggtaaaaatgtacagtatggtTCTTTACAGTTAGGAATCTTACATACATCAATCTTAAGAACTTAGTTTGATTTGTCCTCCTTTATTCAATCCAAATCTGCCACACGTGACAGTCAGAAAGCGCAAggaatgttaatgttgcatccTAGTGCAAACCAAAAAGccaatgtattttgctttaggTCTATCAGAGGATGCAGATAGCTTGGAATAGTCTTCGGAGGCGAAAGCGAACACTGGAGaatgcatttcttaattaaGAAGGGATTAAACTGAACCCGTCGCGATAAACAGACCAATTGGTACAGAGGTCGAACTGCAGACACTTACACATTTCTCAATTTCCAGGCCATCCTTGAAAAAGGTCATGAATGGAGTGATGCCATCTTCACGGTAGTCTAATAATCCAACCATTCCATCGGGGTTCATGGTTTCACCTGTGAAGAACTGAAACAAGACACTGGTGTCAGTCTCCCATTTATAAGgaggaaatacagaaaatacttcAGAGGAGATGCTCAGAGAAATGCGTTCGTTTCACAGGATTTTGTCCTCCAAAGGTGTCCTAAGATTGTCATCACAGCATGTTGTTTCCAGATTAGATCAGTGCTCTGCTACTTTGCCCTCTTACCTGATAGTTCTTCACATTGGCCATaattcttttgatttcttcttgTGCTCCGGCCATGAAGGGCTTTACTCTTTCTGGCTTAGTCTCTTCGAGTTTTGCTTTGATTCTgcccaaaacaaaaagcttaattaaaatatgatcttGCCACTTCAGAATAGAATTAAAATCACCCCCTCGTGTACAATTTCATTGTATTATGAataagggagagagaggaaagtggagggggaaaaaaagtgtggtGCATTCCTGTACTCCTCACATGAAGGCAGTGAATTAATATTCCTTCAGTCAGAAATTAAATCTTGCATGGCACTTGCATATCATAAATATCTGACAAGTTGTGTATACCTCAGCTCTGACCATAGGAAATAGATACCAGGGAAAGATGCTCACACCAATACAAGTTATTAAGGGGAATGTCAGATccttacatttgtaaatgtgtgtaagCAGACCAGATTAGGGAGCACTGCCAAAGCACTGGAGATTTCCTTTGTGGAGACGGTTCTGGTATCAGACTATATGGTCATCCCTTCAGTCTTATACAATTAGGTATCCCTGTCAAAATCCAGTAACTATGCTGAAGAAAgtgaggggtgtgtgtgtgtggaagtgaTCTGTTGGTGGGAATACTTGTCCCATACAAACTAGTTCTCCTAATTGAAGACAAATTAAAGGTACCGaattaaaaacactaacatAATTCTGCTAAGCTTTATACAAAAATGGTAATGTAGCCTGTAAGGGTGGACTTATTCGATGGATCAAATTTTGAAAgtctaaaattgaacttttataatgtttaataaatcaatgcaatgCCCTTTAAACTTTAGACAATTAAGCTGTACAAGTAGAACAGGATACTACTTTTTATCCACCCCACAAAATCTGACATTACCAGTCCTGGTGCTGTGCGCCTCTAATGGGAAACCAATGAGACCTAGTACTTCTTTTTGCAATGTGAAAGGTACATCTTCCAATTAGCTTCTTtgctttcaaaagcattttataGCCACAGTATTCACTCCTCAGCCGTCAACTGCTATTTATAGTATGGAATTGACAAACAACATCTGAGACTAGTTCATTTTAGGGTTTGGTTAGGTGACCTTTGGTCAAACTACACAGATGGCAAATCGATACTACGGAGTGCCAGGgctgcaacaaacaaaaacctgcaacAGAGGCAAATAAACCCCAAGTCTTTAATGTGAATGAGAAGTCAATATCTGAAACAGTTCTGGAGACACCATCATTTAAAGAAAGTGCTTACCCATGGACTTAAACCTTTTGTGGAGCTTTTCTGTATATTGATCCTACGATCCACAGCATTACTTCAAGCTGCTCACTATGGAAGATCAGATCACAAGCACCTTGCGTTTAATTCTTAATCCTACTACATGCTTGCTAATCAAGcataaatgtaatcattaaCTTAATTTTCCGTTGCTGTATATGCTACTGTAATTGCTTCAGTGTCAAATTTGACCGATTACATCACTTCACTCATGTTTCAACCAGTACATTTTCACAATTGCTTGTGAAATGGTTTTGTATATGCAAGGAAAATAAAGGTGGAAGTTTAATGTATGTTCTGGATATGTTGCCCCTTCTACAAGCCCTACAGGGATATTAAGATATTTCAAGTCAAAAGCATAATGCATAATAATCAATAAGCAAGTGTCTTCCTCTATTCAATCCAGGCAACTACAGAGAAGGTGCACAGAAAGCGCGAGGAAATCGCTTTTGCATCATCATATAAAAACCCTTAAAAGCCACTGAATTTGCTTTGGGTCTGTCAAAAGATGCAGTGAAGGCTGGAGATTTCTTCCAGCTTTTGGGAATCGACCGACACACATGCAGTACTTCCACACCCATCCATAGGCAAACTTACGCCTTCATGTAGTCTTTGATGTAGGCTTTGAAGGTGTCCTTTGTGAAGCCAGTTTCTTGAAGTTTGTGGTTTAAAACAATGTCTACTCCACTGACCGTGGACGCCTCGGCTCCCTCTTCCACCACTTCTGCCGAAGCATTCCCACCAATGAGAGCATCGTCAATGTCATCACTCCGGCTGACGACCTTCCCTCTACTTCTATTAAGATCCCATTGGGTGATTCCTTGATTTTGTAAATGTCCGAGAACATTTCATCCCGGTGATGATGTCCTTGTAGATGATCATTCTGTTGGATTGTGTTTCAGGACTTGCGTCAAAGatggctcctgctctccccgcTTGCGGACTCGGCTGAAAAGGACCGGTACACCCTTTCCCCCAACTTAGATACTAGCGGCCGTGATGACGTCATCCAGTAAAGTCTGGAAACAAACCATCCAACTAATTTGCC
>TU89156
AGATCATGAGACATTTTGTCCAGtggtttattctgtttttacaAGTCATGGCAGTAGCTGAACAATcctgggggagagggagataCATCAGATGCAGCTGAATACATAGAGCAAACCATGATGCTGGAGATGTTTTTTGAACCGATGAATTGAAAACCCAAATAAAAAGAGGACTCCAATTGAGATTTTCTTGCTCTGAAGGCATTTCCATTTAGAAGAAGTTTCATACTGCAACACTCACATCAGACAATTTGATACCTGTTGATAaaaatgttctgtaaaatgtCCTGATGGTCTCCGCCATTTACAATTCAGGTCATGAAGACTGGTGGTTGTCTGAGGGccaaaaagtgttttattttaaatttgacattacaatttaaaacaatgttttcattccaaacaaaagaacaaaatgaaGTCCAGTCCATATTCTCGTCTAAATCTTGATGAGAAGCAGCAGCCGGTTAGGATGGGTGGGGAGCAAAACGTGATATCCTGACGTGTTAACATTTCTCAATTTCCAGGCCATCCTTGAAAAAGGTCATGAATGGAGTGATGCCATCTTCACGGTAGTCTAATAATCCAACCATTCCATCGGGGTTCATGGTTTCACCTGTGAAGAACTGATAGTTCTTCACATTGGCCATaattcttttgatttcttcttgTGCTCCGGCCATGAAGGGCTTTACTCTTTCTGGCTTAGTCTCTTCGAGTTTTGCTTTGATTGCCTTCATGTAGTCTTTGATGTAGGCTTTGAAGGTGTCCTTTGTGAAGCCAGTTTCTTGAAGTTTGTGGTTTAAAACAATGTCTACTCCACTGACCGTGGACGCCTCGGCTCCCTCTTCCACCACTTCTGCCGAAGCATTCCCACCAATGAGAGCATCGTCAATGTCATCACTCCGGCTGACGACCTTTCCCTCTACTTCTATTAAGATCCCATTGGGTGATTCCTTGATTTTGTAAATGTCCGAGAACATTTCATCCCCGGTGATGATGTCCTTGTAGATGATCATTCTGTTGGATTGTGTTTCAGGACTTGCGTCAAAGatggctcctgctctccccgcTTGCGGACTCGGCTGAAAAGGACCGGTACACCCTTTCCCCCAACTTAGATACTAGCGGCCGTGATGACGTCATCCAGTAAAGTCTGGAAACAAACCATCCAACTAATTTGCC
>TU89157
AGATCATGAGACATTTTGTCCAGtggtttattctgtttttacaAGTCATGGCAGTAGCTGAACAATcctgggggagagggagataCATCAGATGCAGCTGAATACATAGAGCAAACCATGATGCTGGAGATGTTTTTTGAACCGATGAATTGAAAACCCAAATAAAAAGAGGACTCCAATTGAGATTTTCTTGCTCTGAAGGCATTTCCATTTAGAAGAAGTTTCATACTGCAACACTCACATCAGACAATTTGATACCTGTTGATAaaaatgttctgtaaaatgtCCTGATGGTCTCCGCCATTTACAATTCAGGTCATGAAGACTGGTGGTTGTCTGAGGGccaaaaagtgttttattttaaatttgacattacaatttaaaacaatgttttcattccaaacaaaagaacaaaatgaaGTCCAGTCCATATTCTCGTCTAAATCTTGATGAGAAGCAGCAGCCGGTTAGGATGGGTGGGGAGCAAAACGTGATATCCTGACGTGTTACTGAAAAACATTTCTCAATTTCCAGGCCATCCTTGAAAAAGGTCATGAATGGAGTGATGCCATCTTCACGGTAGTCTAATAATCCAACCATTCCATCGGGGTTCATGGTTTCACCTGTGAAGAACTATAGTTCTTCACATTGGCCATaattcttttgatttcttcttgTGCTCCGGCCATGAAGGGCTTTACTCTTTCTGGCTTAGTCTCTTCGAGTTTTGCTTTGATTCTgcccaaaacaaaaagcttaattaaaatatgatcttGCCACTTCAGAATAGAATTAAAATCACCCCCTCGTGTACAATTTCATTGTATTATGAataagggagagagaggaaagtggagggggaaaaaaagtgtggtGCATTCCTGTACTCCTCACATGAAGGCAGTGAATTAATATTCCTTCAGTCAGAAATTAAATCTTGCATGGCACTTGCATATCATAAATATCTGACAAGTTGTGTATACCTCAGCTCTGACCATAGGAAATAGATACCAGGGAAAGATGCTCACACCAATACAAGTTATTAAGGGGAATGTCAGATccttacatttgtaaatgtgtgtaagCAGACCAGATTAGGGAGCACTGCCAAAGCACTGGAGATTTCCTTTGTGGAGACGGTTCTGGTATCAGACTATATGGTCATCCCTTCAGTCTTATACAATTAGGTATCCCTGTCAAAATCCAGTAACTATGCTGAAGAAAgtgaggggtgtgtgtgtgtggaagtgaTCTGTTGGTGGGAATACTTGTCCCATACAAACTAGTTCTCCTAATTGAAGACAAATTAAAGGTACCGaattaaaaacactaacatAATTCTGCTAAGCTTTATACAAAAATGGTAATGTAGCCTGTAAGGGTGGACTTATTCGATGGATCAAATTTTGAAAgtctaaaattgaacttttataatgtttaataaatcaatgcaatgCCCTTTAAACTTTAGACAATTAAGCTGTACAAGTAGAACAGGATACTACTTTTTATCCACCCCACAAAATCTGACATTACCAGTCCTGGTGCTGTGCGCCTCTAATGGGAAACCAATGAGACCTAGTACTTCTTTTTGCAATGTGAAAGGTACATCTTCCAATTAGCTTCTTtgctttcaaaagcattttataGCCACAGTATTCACTCCTCAGCCGTCAACTGCTATTTATAGTATGGAATTGACAAACAACATCTGAGACTAGTTCATTTTAGGGTTTGGTTAGGTGACCTTTGGTCAAACTACACAGATGGCAAATCGATACTACGGAGTGCCAGGgctgcaacaaacaaaaacctgcaacAGAGGCAAATAAACCCCAAGTCTTTAATGTGAATGAGAAGTCAATATCTGAAACAGTTCTGGAGACACCATCATTTAAAGAAAGTGCTTACCCATGGACTTAAACCTTTTGTGGAGCTTTTCTGTATATTGATCCTACGATCCACAGCATTACTTCAAGCTGCTCACTATGGAAGATCAGATCACAAGCACCTTGCGTTTAATTCTTAATCCTACTACATGCTTGCTAATCAAGcataaatgtaatcattaaCTTAATTTTCCGTTGCTGTATATGCTACTGTAATTGCTTCAGTGTCAAATTTGACCGATTACATCACTTCACTCATGTTTCAACCAGTACATTTTCACAATTGCTTGTGAAATGGTTTTGTATATGCAAGGAAAATAAAGGTGGAAGTTTAATGTATGTTCTGGATATGTTGCCCCTTCTACAAGCCCTACAGGGATATTAAGATATTTCAAGTCAAAAGCATAATGCATAATAATCAATAAGCAAGTGTCTTCCTCTATTCAATCCAGGCAACTACAGAGAAGGTGCACAGAAAGCGCGAGGAAATCGCTTTTGCATCATCATATAAAAACCCTTAAAAGCCACTGAATTTGCTTTGGGTCTGTCAAAAGATGCAGTGAAGGCTGGAGATTTCTTCCAGCTTTTGGGAATCGACCGACACACATGCAGTACTTCCACACCCATCCATAGGCAAACTTACGCCTTCATGTAGTCTTTGATGTAGGCTTTGAAGGTGTCCTTTGTGAAGCCAGTTTCTTGAAGTTTGTGGTTTAAAACAATGTCTACTCCACTGACCGTGGACGCCTCGGCTCCCTCTTCCACCACTTCTGCCGAAGCATTCCCACCAATGAGAGCATCGTCAATGTCATCACTCCGGCTGACGACCTTCCCTCTACTTCTATTAAGATCCCATTGGGTGATTCCTTGATTTTGTAAATGTCCGAGAACATTTCATCCCCGATGATGTCCTTGTAGATGATCATTCTGTTGGATTGTGTTTCAGGACTTGCGTCAAAGatggctcctgctctccccgcTTGCGGACTCGGCTGAAAAGGACCGGTACACCCTTTCCCCCAACTTAGATACTAGCGGCCGTGATGACGTCATCCAGTAAAGTCTGGAAACAAACCATCCAACTAATTTGCC

Function

symbol description
tpt1 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Is expressed in brain; eye; lateral mesoderm; liver; and spinal cord. Orthologous to several human genes including TPT1 (tumor protein, translationally-controlled 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89148 True 3560 lncRNA 0.40 3 19218317 19222919
TU89156 False 1185 lncRNA 0.43 6 19218317 19222919
TU89157 False 2981 lncRNA 0.40 5 19218317 19222919

Neighbor

gene id symbol gene type direction distance location
AMCG00014612 gtf2f2 coding upstream 1984 19214276 ~ 19216333 (+)
AMCG00014613 NA coding upstream 21478 19193419 ~ 19196839 (+)
AMCG00014607 NA coding upstream 27364 19184279 ~ 19190953 (+)
AMCG00014599 NA coding upstream 161854 19048293 ~ 19056463 (+)
AMCG00014598 NA coding upstream 170676 19045683 ~ 19047641 (+)
AMCG00014610 slc25a30,LOC105911955,LOC100698510,LOC104935787,LOC102198731 coding downstream 862 19223781 ~ 19236789 (+)
AMCG00014608 cog3 coding downstream 14651 19237570 ~ 19252607 (+)
AMCG00014609 ednrb,LOC108434743,LOC107658690,LOC107566659,LOC105911940 coding downstream 62414 19285333 ~ 19291750 (+)
AMCG00014606 NA coding downstream 73497 19296416 ~ 19317255 (+)
AMCG00014611 LOC107384298,LOC104941757 coding downstream 96950 19319869 ~ 19330918 (+)
G71237 NA non-coding upstream 170145 19047958 ~ 19048172 (+)
G71183 NA non-coding upstream 316156 18901225 ~ 18902161 (+)
G71136 NA non-coding upstream 525684 18688548 ~ 18692633 (+)
G71038 NA non-coding upstream 740289 18477043 ~ 18478028 (+)
G71036 kctd12 non-coding upstream 749982 18465219 ~ 18468335 (+)
G71362 NA non-coding downstream 701983 19924902 ~ 19925198 (+)
G71378 NA non-coding downstream 963695 20186614 ~ 20186966 (+)
G71414 NA non-coding downstream 1701649 20924568 ~ 20924837 (+)
G71424 NA non-coding downstream 2088671 21311590 ~ 21312022 (+)
G71452 NA non-coding downstream 2896664 22119583 ~ 22122533 (+)
G71004 NA other upstream 943957 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 1731267 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 2749108 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 3079285 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 3532418 15675631 ~ 15685899 (+)
G71525 NA other downstream 3632423 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 7681958 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 8612584 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 8645784 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 9079454 28302373 ~ 28304073 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location