G71315


Basic Information

Item Value
gene id G71315
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19252574 ~ 19255934 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU89190
CCCAAAGATAACAAAAGAGAATTAAAGCTCAGTTTGCATTTCATTGTGAAAGTTGAGAATAGGTAAAAGGGCACAGACAGTGCTGAACCTGACACTCCACAGGATCAGCATACCTATGGGCAGTAATTTAGTCCTTGTAAGCCTGAATAAAATGAGTCatgaggtggagagagagagagagaggaaaaaaagctttatttaaacTTCATCATGAATCCGAgtagataaatattttaattttatatacacTGCTATATAGAAGatgataaagaaaatgttaaatagatCTTATATATTTAGAACTTgacacaaatatttgtattcatgacGCACCTGCATACTTCAAATGGATAAACACCGCACTTGTTCGCAGTTTTCTATTACACAGATGCAGGGAGCCTCTGGCCAATCAAAAGGCAGCATCAGGTAACATTTGGAATTTGCAATGTGCAGTTGGGTGgatatttccatttaaactggTCGCAAATTCATGAAATCATCTGAATCAGTTAAGTAGATCATCCAAGTGCACTAGAAGTTACCATACAGTGTGCAACTACGCCTGAGAGAATCACTTCCCCTTTAATCATTTGCAACATTAGAAATTTGATGTCgatcattataaaaatatgcagCAATCCGTGTCCCCTGCGCATGGAGTcttgcacacacagacagaggtgtAACTTTACAAGGCTCACTGGAATTTACTAACGTGTCAAACATAAAACCTGGCTCTTGAAAGTTAAACCATGAGCTTTACACAGTTAGAGCAAAACACTTTATACCAAAGCCTCCTTCAAAGACCGTTCTctgaccaaaaataaaataggctgATGTCTTGCATTTAAGCTTTGTCTCTTTATCTAAGAAGTGTCTTCTCAGTGCAGGCACAATGAAAGGCCTATGTGAATAGAGAGCGTGAACTACAGTTAGCGCACGCGGGACATTTCTGGGTCAGAGATATCAATCTGCTCTGTATTGCACTCTGGCATGAGAAGTACAAAGGCTCCTCATACTCACAATGTGCAGAAACCCCAAACCCCATTGAccctgtgtgttttcagtgccTTACAGGCAGGGCCCTCTGGGTTAGCTGTGGAAGTGTGCAAAGCCCAGCAAATATGCTCAGTTAAGCCGAATCTTTTGTGTAGGTTCAAAAGCTCTGACTCAACTATCTGCCAaatgtcggtggaaaagcacACTTAATGGAACTGGAGCTCTAGAAGAAAATGGTGATGTGACATCTGCCCCCAACATCATGATAAATAGAGGTATTTGGCAGCAGACAGAGAGGAACGGTACAAACAACACTTTTGATTTGAGAAAGCTCAAAgcatccaaaagaaaaaaaataaaggctgTGAATATAAACATTACTCCACcctttttaatcaatttaatgaAGACCATGCATTAAAAGCAAGCTGCCGTTTGTTTCCCACCTGAATAAGGCTCTGGTATAAACATGCTCATGTATTATTACAGGCTTAAGCTCCCCTCAGTGGCAAAACCCACANNNAAACACAAGCATCCCTGATACTAAACCACTGTACCCAGAAACAACTGCCTGTTTGTGCTGTAGGATTCCAGTGATCCTGTTAAACAGTCAGTTTCCTGGAATACTTGCAAGATGGACGTTTAATTAACGATATGGCATTCTAGTCTGATTACAGGAACCCCCACCTCTAATCTGGAACCGGACAAGTACAGGCATCTACAATGATAACCGCTGCTCCCGAATTACCTGCTAGTTTCATAGTAACACCCCGCATTTGAGTTAATGGCATGGAAACTGTTGTGTCAAATGTACAATCTCAGCTGTCCCCGTATGCACTATTATATAGAAAAAGGTTGGTATAAAAGAGAAAAGGTACCAAAAGATAATGGAAGAGATCCCATGTGGACGTCAGAAAGGACCAAGTCCAGGCTGCTTCCAAGCCGAGGAGCCTCACCCAACATCCACCTCAGGCCCACCTTCTTCCTGCGGTTCTCGGTTTTGGAACTAGTGTTACTACGTTTAATAATGACAGATACACAGAACTCAAAAAGGACAGGCATGTCAGATGTTTGCAAGGCCagcttttttcctttgtcagcaTGACTTGGTCTTTGGTAGAAATGCATTGACTATGAATCCCAGGAAACCTCTCAAGATCACTCAAGCCCTGGATGTCGCTTCAGCTGGTGAAGACCTGCAGTTCACAGATTTTGGAGTGAGCTTGCCCGAGATTGCAGCCGCTGTGGAAGCCAACAAACTGGAGTCCGATAGCACCTCCTGCTCGCCCGGCCAATAACACCCCTTCATTCAGGACCATCTCAACAGGATGCTATTTATTCACAGACAGTAGTAAGTTGATCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89190 True 2364 lncRNA 0.42 2 19252574 19255934

Neighbor

gene id symbol gene type direction distance location
AMCG00014600 NA coding downstream 68381 19174682 ~ 19184193 (-)
AMCG00014602 tsc22d1,LOC107713726,LOC107551985,LOC107748883,LOC107576221 coding downstream 89787 19159929 ~ 19162787 (-)
AMCG00014601 tsc22d1,LOC107551985,LOC107713726,LOC107688650,LOC107748883 coding downstream 129748 19114367 ~ 19122826 (-)
AMCG00014597 NA coding downstream 253557 18971436 ~ 18999017 (-)
AMCG00014593 NA coding downstream 305653 18932137 ~ 18946921 (-)
AMCG00014615 NA coding upstream 74954 19330888 ~ 19338660 (-)
AMCG00014614 NA coding upstream 86197 19342131 ~ 19345670 (-)
AMCG00014616 NA coding upstream 130681 19386615 ~ 19390852 (-)
AMCG00014623 LOC108428456 coding upstream 1103212 20359146 ~ 20401033 (-)
AMCG00014621 NA coding upstream 1196250 20452184 ~ 20458681 (-)
G71292 NA non-coding downstream 35537 19216213 ~ 19217037 (-)
G71291 NA non-coding downstream 37328 19214614 ~ 19215246 (-)
G71290 NA non-coding downstream 38170 19212644 ~ 19214404 (-)
G71284 NA non-coding downstream 60942 19191385 ~ 19191632 (-)
G71179 NA non-coding downstream 374321 18874605 ~ 18878253 (-)
G71360 NA non-coding upstream 536865 19792799 ~ 19880231 (-)
G71371 NA non-coding upstream 817091 20073025 ~ 20078009 (-)
G71379 NA non-coding upstream 930695 20186629 ~ 20186968 (-)
G71451 NA non-coding upstream 2741988 21997922 ~ 21998188 (-)
G71461 NA non-coding upstream 2965136 22221070 ~ 22221467 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 27344 19217722 ~ 19225230 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other downstream 49007 19201803 ~ 19203567 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 1230479 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 1631423 17589267 ~ 17621151 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 1790284 17446868 ~ 17462290 (-)
AMCG00014630 LOC107672672 other upstream 2969990 22225924 ~ 22244915 (-)
AMCG00014693 NA other upstream 8029486 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 8079761 27335695 ~ 27369527 (-)
G72236 rpl8,LOC107595836,LOC107748161 other upstream 9073805 28329739 ~ 28332482 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 10133356 29389290 ~ 29398305 (-)

Expression


Co-expression Network