G71371


Basic Information

Item Value
gene id G71371
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 20073025 ~ 20078009 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU89256
GATTTTTGTGGGATGATTGATCTATATGAAAGagtttattaacattttcatgtgAAATGCATGTCTTCAGGTGCAAATGGACTTGATTGTCACATTTTACCCCAATTCccacattacattaaatttacCCATTACACTCTGTGGCCACAAACCTGATTCTGTCACAATTTTCTCACACATGTAACATGCACATATAAATACTGGAATATTGAAATTACACCAATGTCAGCTTTTCCCAATTACAAATGATCAATGGTTGTGTATTATTGAATGCTTGATTAGTGAAAATAAAGATATTTGGTTTTAATGCAAGCCTACATGATGACCAATATGCAAATATGCCGAATTTGGAGACAAGCCAGAAACcattataattaaatcatttgagCAGAAGGGGACAAACACTGGATTGAGGATAGGAAGGCTGGATATTTAACAGCAGTGACGTATTACTGTGCATGACTTCCAAATCATCATATATTTGCTCCCACTATAAATTAGCTTTACGCTTTGTTTTGTGAGACTGGACTAATGAGGTACATTAAACATTAGCCTGAagtcagactttaaaaatactgtctgggctaaatataaaaacagatttccaAAAGTACTATTAACAAGCAAAGCCatcataatgataatgaaatCTTAAGTACAGACTGTTCATTTAATAAAAGATCATTCTTAAAATAAGTCCTTCAAttctatttattgtattaatataatctCCTTAGCTGCAAgtgcttgtattttatttatttcaaatcgGCCTCTCTTTTCAGAAAGCCCCTTTAACTAATAATTGTACACTTTACACAGTGTTCCAGCAACCTGATAACTAGCTGTAGCAACTGTTGTCACAAGTTGTAATTACTTTGAAGTTCCCAATGGTATGTAGCATTTAACACATATCCTCAATGTTAATGAATGTGAGAGCAGGAGACACCACTATTAGtaattgcttttattcataGTCTTCATTTTCCAGATAGATCACATTAAACACAGCCATTAGACAATAGCGGTTGAGATAATCCATACAATGTatgtctcttttcttttcaccaGTTGCCTGGTGTAGCTTAGAGCCCTATGGGGTGACAGGGGCTGATAAATGTTGAACACCAGCCCATGGACCAATAGGGGCTGGAAGAGTCAGGACCTCAATCAGGTTTCATTCAATTACACTCCAAATCAACAAACTTTGATAGCCGAAATTCCCTTCTGACTAATGTACCAATTAATCTTGCCTGATGCCAAAAGAATGTAATTAGACAATAATGAGTGGGTGTATATTATGTTAGATTTCAAACTACTTGTTGACCTCAACAACTTATACTCCATTAGACAACAAACAGCTTGAAAATCAGCTATAATAAAGTATGACACATAACCTCCTTTTTTTAGGACTAAATCTGAATGCAGGACATCAGCTGACCCTTAAGGTAATGGTAAGTTAATTTCAGGAATAGAGTGCTAACCGTTTGATCAAAGTGACAatggtttattaaaatgattgcaAAAAGTCTGTGAATAGGATTACTTGCCCATGATACTGAACACTCCGTCTTgacatacacagacaaacataaaaacaatgaaagtgaGATCAATTgtttgaaaaacatgaaataaacaataacagtgtgtgtgttttctgagtGCTATGGCTAGGCAACACGTTTGTTCCCTGAAGTTTGTATTagctaaaattaaataatttggctctggctaaatatatatatatatatataaatctgccAGATATAAATCATCTTTTGCAGTGACGACATCGGAATCATACGCTACActgaatgttgtttttgttgttgttgaaccTTTCCTGGTAACATGTAGAGCATGTCACACCTGTCAAACCTGTcaggctttttaaaatcttacttacaaaaaaaataaaaagtatcctttttccaaaatgtatctCTGGCAGTACACTTGCTTCACTAGGGTGTTGAATGTTCCTTTTTGAGTTTTacctgaataaaaaaatattaaaaaattacaaaatcctgCTGTAGAAGCAGAGTGAAAAGCAAGATATGTATTCTCTTCAAACAAtctttttaatggaaacaatGTCTTGTCTTGCTTTTACCTCAGGTTCctgcttatttaaataaattaataataaacagtttCTTAAGAATGGCCGCTTATGGTACGTAATATAGTTCTGTGGTTTCAGGATCTCTACAGGATATTGAACTATTTTTCAGGTAAGGCCAATCTCTTTCTGCCCTAAAGGCTTAACTGCCAACATACATTCTGCATATATGCTGCCAGATATAATTCAAACTTAATTTGTAGACCAAAAAAgccaatatatttacatatattaatgtCTCTTCATTGCAGTGCTGCTCTGTATTAAAGTCTGCTGTACTGCTTTACTTCCGGtttaatcagattatttttcattatttgtgtaGTGGCATTTACTGTACTGGAATCTGTACAATCGTATGAGCtgaatgtgctttgtttttaataaaagccTTATTTCACAATGAGAAAACCTGAACATAGATATTAAACTCTGCTTCTAGTGCTACAACTGCctgaattaagaaaataaaaaaataaggaaaatggaATTTCAGTTATCAAGTTCGGTAATTTTTTGAGATTTCTGGTAAAATAACAATGTGACACATACAGAAAACATCTTGACAATACATAAACTGCTCAAGAGTAACTTTTTCTTTTGgtccttaattaaataatgatactGCTCATTCTTCTATAGACAATGGGATATCCTCAACAGTCAAGAGCAATCGAGTTGTAATAAGAGAATCTCAGAGCACTTTTTATGTTAGTAAGGCAGTAGTCTATTCAGTAATGAAACAATTCTGCTATAAAAATgccaggttttctttttttttaagttactttttttttagctgCCTCGGTTTGATACATTAGTTTAGTAAAAGTACTCTAGTCATATATGGTTGTTGCTTTTCATTAGCTGGCTCATAAAGCTTTGAACAGTTTATGTATTCTAGTACAGTTTGACCAAACGTTAAACAAGAGACTTTGCTCTGAGGCATTGCTACCCACTCCTGAGGGAAAAgggagcagaaaaaaaatgaaattaaactcaTAGAGTTCGACAGCTACTAAGGCAACAGTTGCCAAATACAATATAAGCCCAAGTATATTGCAACACaactatatattaatttaataaaatacacaatatagcTCTTATACACTTAACAATTTGGCTCATATGCACAGAAAttgcaataaatcaataaaaatatgtaattttgatgtaaacacattaaattcaatacatttgcacattaaATGATCTTGTGTATAGTGATAATGTGAAGGGACATTTCCTTTTGAGAGCCTTTGCAGTGTCCTCtgcagtttataaataaatatttcacaattaactGCAGTTTagcattttttaacactttttttgttttgatttttttcttttttacaaaatgtataaatatttttgttaatatcTGGACACTATAcataagtttatatatatatatatatcttttcaCAGTAGAAGAAAAATGTCCCTAATATACAGGATTATGAGTGGCATTGGGAAGGTTAGACAAGTGGACATAACTGTACATGAAGAGATCAGGAAGTTTATGACGGATGAAGTGTTTACACAATGATCAGGGTGTGTTTTACTGCTTCACCAATTTGGAATGTTCTATGTGGCAGATAAATATAAGGgaacacagtttacacaagtgatTGCTGATGGGATGTGAagatctgtattattttatcaccaccccccacccctaccCTTTCCCCGTTAAAAAGATCTTCTTTTGAACAACAATACCATGAAATCCACAATGCTTGGCTtgtcctcctcctcactcagaCCAAGTTGCTCCGGAATCCGCAAACCAAAGCTCTGGTTTCTAACCGATTGTCATAACATTCTGATACCCATCCATTCATTGTGGATGTCTCCTGCCCGCCCTCACCCTCCCCGGCTGTGAATTGGTGTTCCTTGTGAAGGACAAACTGTAGTGAAAAAGTTATGAGTTGGTGGGCACTTGAAATGCTTACTAGAAGCCAGACGCTGCATCTTCAGCCATCTCCGGGAATCCTAAAGTCTCGGGTCATGTCCTTTCAAAGTTACCCCTCCTTCCTCAGAAGATGCATTGCAATTGTCAGTGTCTTTATTTCGATTatattctttgtttcttttgaaatggtttttttttttcactttcttattGATGTGGCTTCACTCCCTCGACAGTCCTGTAAAAGCTTATCGATTTCACGCACTACTTGTTCAGCATCCATACCCTCCCGGCTTAATTCTGGGTTGGACTGGTCCAACTGCTCCAGAACACAGTCCATCTCGTTCGAGTCTCGACTCACTCGTGAATGCACATCAGCAAGAACTTTAGCCATGGGATCGGACATAAGGTATTGGGAGTCTTTCAGTTGTTTATTAGGCGACAGGTACTGACTACTCGTTTCTGCAAAGTTGCCAGGTTTACCTTCACAGCCGTCTATAAGTCCTTTTGTGGATGTGCATGCAGGGATACACATTTTGCTTGGGCTGTTTGAAGCCGAGGGCACCTCTTGCAATAATGGGCTCAGAGCGCGCTTGGCTTTCAAATAAGGTTTGACATTGGCAACGAGGATTGTGTgatctcttttctcttttccaaaAGTGCAGAAAGTCTTTTTTCCATTGGGGTTCACGGTTTCATAGGTTTCGGTCTCCACTGTTGCTTCCATTCCTGCTGGTACAAAAAGGTTTGTGCGATAATCTGCGCTTTCTGCCTGGTTAGCTGTAGGGAACTGAGGCATCCAACACCTGTCAGAATGTCCTAGTACTCGACACTCATCCGTGCAATTAACGCACTCTTCTtgttc

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU89256 True 4917 lncRNA 0.36 3 20073025 20078009

Neighbor

gene id symbol gene type direction distance location
AMCG00014616 NA coding downstream 682173 19386615 ~ 19390852 (-)
AMCG00014614 NA coding downstream 727355 19342131 ~ 19345670 (-)
AMCG00014615 NA coding downstream 734365 19330888 ~ 19338660 (-)
AMCG00014600 NA coding downstream 888832 19174682 ~ 19184193 (-)
AMCG00014602 tsc22d1,LOC107713726,LOC107551985,LOC107748883,LOC107576221 coding downstream 910238 19159929 ~ 19162787 (-)
AMCG00014623 LOC108428456 coding upstream 281137 20359146 ~ 20401033 (-)
AMCG00014621 NA coding upstream 374175 20452184 ~ 20458681 (-)
AMCG00014620 diaph3,LOC102302025,LOC102782473 coding upstream 398340 20476349 ~ 20479063 (-)
AMCG00014622 LOC106574996 coding upstream 623815 20701824 ~ 20708613 (-)
AMCG00014625 NA coding upstream 1218005 21296014 ~ 21312988 (-)
G71360 NA non-coding downstream 192794 19792799 ~ 19880231 (-)
G71315 NA non-coding downstream 817091 19252574 ~ 19255934 (-)
G71292 NA non-coding downstream 855988 19216213 ~ 19217037 (-)
G71291 NA non-coding downstream 857779 19214614 ~ 19215246 (-)
G71290 NA non-coding downstream 858621 19212644 ~ 19214404 (-)
G71379 NA non-coding upstream 108620 20186629 ~ 20186968 (-)
G71451 NA non-coding upstream 1919913 21997922 ~ 21998188 (-)
G71461 NA non-coding upstream 2143061 22221070 ~ 22221467 (-)
G71496 LOC100846954 non-coding upstream 2228625 22306634 ~ 22306947 (-)
G71512 NA non-coding upstream 2479374 22557383 ~ 22557663 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 847795 19217722 ~ 19225230 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other downstream 869458 19201803 ~ 19203567 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 2050930 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 2451874 17589267 ~ 17621151 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 2610735 17446868 ~ 17462290 (-)
AMCG00014630 LOC107672672 other upstream 2147915 22225924 ~ 22244915 (-)
AMCG00014693 NA other upstream 7207411 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 7257686 27335695 ~ 27369527 (-)
G72236 rpl8,LOC107595836,LOC107748161 other upstream 8251730 28329739 ~ 28332482 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 9311281 29389290 ~ 29398305 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004220 pcdh17 coding NC_007122.7 CM002895.2 32576300 ~ 32723851 (-)
striped catfish (Pangasianodon hypophthalmus) G186028 NA non-coding NC_047605.1 CM018551.1 22378283 ~ 22380802 (-)
mexican tetra (Astyanax mexicanus) G40800 NA non-coding NC_035901.1 CM008304.1 7013868 ~ 7014212 (-)