G71452


Basic Information

Item Value
gene id G71452
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 22119583 ~ 22122533 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU89346
aAATAgtacatttattgaaaaattGTTTTCAACAGTAATAACACACAACTTACAAAATCCCTAAATTGACAATTTTAACAAAGCAACTTGGTACAGTCAGTGCAGCATAATGATTCATTACAGGTTTACAAatcatacacaaatataaaaagataaGCATCAAGTAAgatttttttcatattgtgtatatatcacacacacacactgcactgaataACAGTAGAAATCCTGATATTCTCAGTTTTCTATATTAATAGTTCCATGATATGTCCATCTGTTCAGAGAAACCAACCAATTTATCAAAAAAGTACTCAAGAGTATCATACTTCTTTGCCATTTATAATACTTTACTAAAAATACAGAGCATATCTTGGGCTGCagttatgtattaaacatggttttcttttttcatactTCCAGAGAATAGTTATTTCTTCGtggaaaaataatatgtttaataaacaaGGAGTGCAAGTGGGGGAAATCTACTAGTCTGTCTGTTATTCTTAAATCATTTAATATGTTTGCTTCCATATATCCAACATGCACTATTTGATAGTGACAGAGTAAAGGTAAAATAGAAAGCCATTCTTCAACATCATGTAAGCAGTCAGGAACATAACATTTGGCAAAAGGCTTGCTTTTCAACATGATCATTTCCCAAATCAATTACAgattataaatgattaaaatcaGGAAGAAAAACTGGTTTTAAGCCTCGTGCACAGGTATGGAAGGTCCCAAAACATTTCAGTAGACAGTAAAATGATAGAAGAACATGTATTTAGTTGAATTTTACTTTGAgacataatataatttaatataaatccaTAGTTTAGcctgtttttcttcataatttGAACTGTCAGTAAATGAAGAGAGTCATCACACCCTGGGGCTGTCATTTAGTTGACTAAACCAGAAAAGATTAAAGGTTGGAGAGACACCCTTCTCCAAgatctggaaataattaattaagaattttgcatcaaataaattaaatcaaattatccCAGTGGTCTGACAACACCCCGTTTAAAATTTCAGAATTACATGTCAGAACTGCTATGCATACATTGGAGCATTCTTTCCAAACAGCACTCCACAAAGCTTGTGTACAATATTTCAAGTAAATTAGATGGGATGAAATAGGAAAATAACACCCAGAAAAATAGATACTTGGAGAACAATCATAAACAAACAACGATAAGGAAAACAGGACGAGACGTGACGTTCAATTGTCATACTTAGAGATTTTAGATGGACTCGCAATGTTAAATCCACTTTTGCATTTTCGTTTTGTTGATTCAACGGTACTTCTCATTTCCTTCACACTTTCAGATTCCAACATACTATGAAATGGGGAACTTCCCTCAGCCTGATCGAGCTGGGCTTCGGTAGAGGTGGAAGAAGATGAAGATCCAGGCTTTGCCTCCTCCGAAAATCCATGCGAATCAAACAGCAAATCAAACGACATTTCATCCGATTGCGAGAAACCTTGATTCATTTGGAGACTGCTGACCTGTGTACCCTCTTCTTGCGACAAACAaaacttttctttcatttcaggGGAACGTAAAGCCCTGTTGGACATGGAAACTGGGTTACTGTCATTTTTCCCTTCCCTGCCCTCTGGAGAACAGGATGCAATACGTTGGTTCGTTCTCACCTTTTCCTCAAGCTGTCCGTCAACTTCATTCATAAGTTCAGTGCAAGCTGCCAGTTCTGGTATCAAAGTAATATCAAGGTCAGAGGACTGTGTCGACATTAAAGAGAAATGAGAGCCCCTGCTGCTTTCAGATTCAGATATCATAGTGTCCAACTCAGAGATTTTATCAAGGTAAGCAGCTTCCATGGATGCCTCGCTTGACATTCTTAAGCGGTTCGTTTCCGAGTCAGCAATAACCTGAAAGGGTCCactcaaaacattttcacatttactttTTCCACCAGTGGGTTGGTCTTCAGCTTGACTAGAGCCTGCCGTCTCAGAAGCATCAAGGTCAGCATGGCACTTTCCCCAGAAAACTGGCTGTGTAGTTCTAGCTTGTGCTTTGTGTTCTCCAGGCATGATATTACCTCCATTAGAGTCACCTAATCTGTCTTTCTCCAGTTTAGATGATTTACTACATCCCTCATCATCAAAACTTAGTTTTCTTAGGTAAGATAAAGGCTTTACACCACTCTTTCTTTGACTGTGATCTCTAGGGCTGTTTAAACTAAGGCAGCCAAAAGATGAGGAAGGAGTAGTAGCCACAGAAAGATCTGAATCATTCTTGTCTTTTTTGGGAGTGATATCATCACAGGTCTTCTTGACTGGTAAGACACTAGATGCATTGCTTTTTGTtgcagtagaaaaaataaatctgcagggCCTTGAGAGCTTGCCATTGTTTGCCAGATCTGTGCACTCTGGTGCTTCTTCCATGCCACTGGCACTACTACTCATGTTTGCTATCCCATGGCACTCCTTTTTACATGGCTTGTTGCACACTGCAAGCTGCTCACTGCTGGGTTCCCCTTGAAATGGTGAATCTACAGTGTTTAGCTTAACTACCTCACAGGAATTACCCACATTCTCCTCttcatcatttgttttcttcatattaGTTACTTGACCTTCCAAATCCTCTATGTACTTATCACTTCTTTCGAGTGCTCTCCTCAGATGGGTGGCATCACGTTCATGTTGCTCAATCTTTGCCTCCAATGCCGCTACTGTGAACCTGCCAAACCTGTGGAAGCAAAACTACATGGTGAACTTTAAGCCTTATATCCAATAATTGTTTTGCAACTAATGTTGTTATTCTGATATTCAATCATAGACTCTCTctgagcaaagaaaaaaaagtgtattcacaatatttacatatggagtatataataaagattaataattgtatacacattctgtatttattcatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89346 True 2925 lncRNA 0.37 2 22119583 22122533

Neighbor

gene id symbol gene type direction distance location
AMCG00014624 NA coding upstream 1452403 20646339 ~ 20667180 (+)
AMCG00014619 NA coding upstream 2046513 20024521 ~ 20073070 (+)
AMCG00014618 NA coding upstream 2097889 19959589 ~ 20021694 (+)
AMCG00014617 NA coding upstream 2275541 19843152 ~ 19844042 (+)
AMCG00014605 NA coding upstream 2735264 19380431 ~ 19384319 (+)
AMCG00014632 nfip2,LOC107750051 coding downstream 125248 22247781 ~ 22264000 (+)
AMCG00014635 NA coding downstream 2260234 24382767 ~ 24385815 (+)
AMCG00014636 LOC108414264,LOC103139365,LOC102217784,LOC103461949 coding downstream 2569753 24692286 ~ 24759297 (+)
AMCG00014638 NA coding downstream 2766000 24888533 ~ 24897009 (+)
AMCG00014637 NA coding downstream 2805498 24928031 ~ 24937965 (+)
G71424 NA non-coding upstream 807561 21311590 ~ 21312022 (+)
G71414 NA non-coding upstream 1194746 20924568 ~ 20924837 (+)
G71378 NA non-coding upstream 1932617 20186614 ~ 20186966 (+)
G71362 NA non-coding upstream 2194385 19924902 ~ 19925198 (+)
G71283 tpt1,LOC106582181 non-coding upstream 2896664 19218317 ~ 19222919 (+)
G71459 NA non-coding downstream 66106 22188639 ~ 22188927 (+)
G71460 NA non-coding downstream 73086 22195619 ~ 22195875 (+)
G71462 NA non-coding downstream 105893 22228426 ~ 22230696 (+)
G71518 NA non-coding downstream 532825 22655358 ~ 22655614 (+)
G71557 NA non-coding downstream 1242227 23364760 ~ 23365002 (+)
G71004 NA other upstream 3845223 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 4632533 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 5650374 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 5980551 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 6433684 15675631 ~ 15685899 (+)
G71525 NA other downstream 732809 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 4782344 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 5712970 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 5746170 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 6179840 28302373 ~ 28304073 (+)

Expression


Co-expression Network