G71598


Basic Information

Item Value
gene id G71598
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 24523645 ~ 24532961 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU89508
ACGGTGGTGCCATGCTGTCTGAGTGTAATGCACTGACTGATCAAAGTGTGCTATGGAGAAGCTATCGACATTGGAATTGATAGATGCAGGGACACCGGAGAAGGTGAATGAAAACGGAAGGCATACCCAGCAGACAGAAAACGTTGAAGCTGAGGATAGATCGGGCACAGACAGCAGAGAAGGGGCCAACCTTCTGacctttaatttgatttgtgtgattacattgcttttaaatgtgtgctaACATCACTGACCTGCAGTGTTTAGCTCTAATGATGGTTTCATAAGCCTGATGAAAAGGGGTTATAATAGTAGTGCAAAGATGGGAACGGTTCCCTTTGTTGTCCATTGCACAGTGCCTCTCCTATCAGGGATAAtagggaaacaaaaaataaaaagcagcatgATATTATAATTACTTTACAAGATACCTATAGATACATGCTCCGCCTTGAAGAAAAAGTGTAGCTAAGCAGCAGATTGCTCTGTTCAGAACCGAAGGTGACATTTCTACAGAatcactgtgtgtctctgtgctgctcaTACTTTATTACAGGGCATCTCATTAAAATTGAAGTGTCTACTACTTTTACTCTTGTCAAACACTGATTGCTACTTATGTGACAGACATTAATTTAAGACTTaattaacattacaaataatgtaatgtctaACTTTCTGCATCATTAATTTATGAACCGTAATTTTGCCAAGATAACTACCCAATCGTATATTAAAATGCCATACATTATGTAGGCCTCACAGACTAGCTGTACACATAATATAgcactctttttaaaaaacTTGTCACAGTTTCTGTTGTTGTGAGATagtgaaagaaagagaggcTTAACagctatgtttttttatattatatcagTCTCTGCTAGAAGTTTAGACTTCATTGAAAaggttctgttcttttttttcttttcaaaaataatatatccctatgttataaagtataatttgtatttttttcttaaagaaaaccaaacataattattatatatattccagACACTTTTTATTTGCCACCTCTTCATGTTCCtaggtttttccttttgtttaaaaGCCTCCAGTGGGCTCTCCAATGCAGCaggtcaattaattaatttacctaCGACTCCAAAAAGagacaaagttttttttttttttcctcatataATGAACCAACTCCACTTATTTCAGGTTTccatattttctaaataattaattatttttagctGTGACTCCGTCACTTTCCAATCTCTATTGTATTTAAGAATTAAAGCTACAATGACAGAATgccttatttaaaatataagcacatattaattcagtaaaatgtaattgcagaCACTTTTCTTCAACAGTCCTTGAGTTTCTAGAAATCATAGACCGAGGTTTGAGATAATGTACGAATTGCAGTAAATAATATtgcaaatatgaataaaaagaTTACCAATAGAAAATTGAGGGAGAACGGGGGATGGGGGACACATATATTTGTGTACTAGGCAATGTACACACTTCTCTGTCCTTGAAAAGAACACAAGTTTGCACAACCACTGCAAAGAATGCACAAATTGTAACCCCCAATAATAAAAAGTTCTTCCACCATGCGAGTCACAATGAAGTAAATAAAGAAGAATGGGCTGAGTCCCACAGAATACAGACTGCAGGCTTATATCCAGTCTGCAATGCACAATTGACCATTAACAGTTAGCAGGTGGTTCCCTTGTTGATGCGCAACAGGGACCCCTGCTGGTCAAGTAGCAGAACAGTGAGAGCCGTGCCCATCCTCTCCCAAGTGATCAGCCACTTGTGATGTCATGGAGGACACTGGAGTCTTTCCACAGCTCTCCTAAGCATCTATGTAGTACAAAAACTGGGGAACAGATTGCTGCAGCTGTATTTTGCAcacataacaataaatacatcagatcACTTTTTCAACCCTTATCAAATCATATACTGCACATTCGGTTTTGAGATTCACAGATTTCACAGGATTTTGTTTCCAGTGCAATATTTGCACAGATGTTTGCAATGTCCGTTAGTTTGCAACTAAaatccaaaaatatatttttgatttgttttttcaatacctacattttatattggtaattttacattttataggtTTGTGaatatgtagaaaatgtatgtatttactatAGGTAAAGGGAGGAGGGCTGCCTTTTAGTGATAAATAGTTTTgccttgttttaattattataaatgatcaTTTAACACATGTATCCGTtctattttcctgtttttgcaaaataataccCTGCCCCTGGAAAAAAAGCTGTTAAAGTGACATATGTCTGTTTATTCTTCTATTTAGATCtcaaataatgtttatatt

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function
GO:0043167 ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89508 True 2356 lncRNA 0.35 2 24523645 24532961

Neighbor

gene id symbol gene type direction distance location
AMCG00014635 NA coding upstream 137830 24382767 ~ 24385815 (+)
AMCG00014632 nfip2,LOC107750051 coding upstream 2259645 22247781 ~ 22264000 (+)
AMCG00014624 NA coding upstream 3856465 20646339 ~ 20667180 (+)
AMCG00014619 NA coding upstream 4450575 20024521 ~ 20073070 (+)
AMCG00014618 NA coding upstream 4501951 19959589 ~ 20021694 (+)
AMCG00014636 LOC108414264,LOC103139365,LOC102217784,LOC103461949 coding downstream 159325 24692286 ~ 24759297 (+)
AMCG00014638 NA coding downstream 355572 24888533 ~ 24897009 (+)
AMCG00014637 NA coding downstream 395070 24928031 ~ 24937965 (+)
AMCG00014643 NA coding downstream 554053 25087014 ~ 25102638 (+)
AMCG00014646 NA coding downstream 591133 25124094 ~ 25126045 (+)
G71596 NA non-coding upstream 190348 24332431 ~ 24333297 (+)
G71584 NA non-coding upstream 614996 23908385 ~ 23908649 (+)
G71581 NA non-coding upstream 818211 23705163 ~ 23705434 (+)
G71574 NA non-coding upstream 926322 23597118 ~ 23597323 (+)
G71557 NA non-coding upstream 1158643 23364760 ~ 23365002 (+)
G71662 NA non-coding downstream 549698 25082659 ~ 25082878 (+)
G71670 NA non-coding downstream 576195 25109156 ~ 25109378 (+)
G71725 NA non-coding downstream 1000381 25533342 ~ 25534154 (+)
G71763 NA non-coding downstream 1172497 25705458 ~ 25762742 (+)
G71772 NA non-coding downstream 1212842 25745803 ~ 25748408 (+)
G71525 NA other upstream 1667999 22855342 ~ 22855646 (+)
G71004 NA other upstream 6249285 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 7036595 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 8054436 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 8384613 16129479 ~ 16139032 (+)
AMCG00014687 NA other downstream 2371916 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 3302542 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 3335742 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 3769412 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 4264088 28797049 ~ 28837910 (+)

Expression


Co-expression Network