G71725


Basic Information

Item Value
gene id G71725
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25533342 ~ 25534154 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU89672
GATAAGAGTcccttattttattaacttcCCATTTTTTCACTTCTACAGGTATTGTTGTGTGGCACCACTATCTGTTTATGAAGCTATTGATAttgaactaattaaaaaatattaaaagctaCATTTTCCTGGTTTCTATTTTCATACTTGTGGTAAAGCATATCTAAAGGCAGTTTTGGTGTTGGGGGTTTTCATTTCTCCTCACGGTTGACGCCCTTTGTAACTGAACTGTTGAACGTCATGATGTAAAGCATGTAGACTGCATTCCTCTGGCTAGCTGTGCTGTAAAACTTGCCCATCGTTATTGCCATACAGCTAGTCCCAGAAATGTCCGACCCGGGAAATGATTCACTCTTCTGCTTTCtgacaaatgtttaaattggaaACCACTCTCCAACATCTCCTAGTCCGGCGATGTACAGTTCGCTATGACCGCTACAGCTAAGAATCTTGTTTAAATGAAtcaagctgaaaaaaaaatacattttatgtgtgtgtcGGTTTTTTAAACCCTGATTTTGCAACATACAATtaaggaaatgtgtttaaagcTTGTGAAATAACTGTACTTGGTGCCATTCTTAAATCCAGGTGCTCTGCTGCAATTGGTGAAAAACTTCTAGATATGTATCAGATTCTTTCAGCTTTCACAAAGGCAGTGGGACAAACAAAGGCTTAAATTGTGCttgaaggaataaaaaaattCTTTGATGCAACCCTGGAAGCATCCATGGACAGAAATTACATTATCAGTGgtccttttgaaaatgttatatacGCTGCTAAATTGATTCTAGAAGCTTGATTACTGCc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89672 True 813 lncRNA 0.37 1 25533342 25534154

Neighbor

gene id symbol gene type direction distance location
AMCG00014653 rap2a,LOC101166017,LOC106512668,LOC105907999,LOC105933629,LOC100695037,LOC103391592,LOC106582448 coding upstream 2493 25522226 ~ 25530849 (+)
AMCG00014651 mbnl2,LOC107677847,LOC107653675,LOC107555253,LOC107559795 coding upstream 28339 25479791 ~ 25505003 (+)
AMCG00014649 LOC105024749,LOC106586266,LOC106582445 coding upstream 159270 25373386 ~ 25374072 (+)
AMCG00014648 hs6st3,LOC105898056,LOC102202054,LOC101476457,LOC100690379 coding upstream 287381 25245413 ~ 25245961 (+)
AMCG00014644 dnajc3 coding upstream 369707 25149803 ~ 25163635 (+)
AMCG00014652 NA coding downstream 31003 25565157 ~ 25574008 (+)
AMCG00014654 kpnb3,ipo5,LOC107677849 coding downstream 41086 25575240 ~ 25592567 (+)
AMCG00014657 NA coding downstream 74834 25608988 ~ 25630854 (+)
AMCG00014655 LOC107559785 coding downstream 126191 25660345 ~ 25698928 (+)
AMCG00014661 gpr18,LOC107740919,LOC107681324,LOC107600424,LOC107748622,LOC107668869 coding downstream 400327 25934481 ~ 25941543 (+)
G71670 NA non-coding upstream 423964 25109156 ~ 25109378 (+)
G71662 NA non-coding upstream 450464 25082659 ~ 25082878 (+)
G71598 NA non-coding upstream 1000381 24523645 ~ 24532961 (+)
G71596 NA non-coding upstream 1200045 24332431 ~ 24333297 (+)
G71584 NA non-coding upstream 1624693 23908385 ~ 23908649 (+)
G71763 NA non-coding downstream 171304 25705458 ~ 25762742 (+)
G71772 NA non-coding downstream 211649 25745803 ~ 25748408 (+)
G71784 NA non-coding downstream 236055 25770209 ~ 25770489 (+)
G71817 NA non-coding downstream 418079 25952233 ~ 25959702 (+)
G71826 NA non-coding downstream 476645 26010799 ~ 26011000 (+)
G71525 NA other upstream 2677696 22855342 ~ 22855646 (+)
G71004 NA other upstream 7258982 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 8046292 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 9064133 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 9394310 16129479 ~ 16139032 (+)
AMCG00014687 NA other downstream 1370723 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 2301349 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 2334549 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 2768219 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 3262895 28797049 ~ 28837910 (+)

Expression


Co-expression Network