G71740 (ipo5,kpnb3,LOC107730386,LOC107555240)


Basic Information

Item Value
gene id G71740
gene name ipo5,kpnb3,LOC107730386,LOC107555240
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25590818 ~ 25591551 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU89693
attttaaatttgacaacTGTACAATGGCTATGGTGACTGGCAAATATTATCCCATGCATGTAATTCGTTTCCATATATAATTCAAAGGTTTACCTGAACTTGACGAATAACATTTGCCAACCGTTTGCTACATCCATCTTCATGCTTAACCGACTCACTGACGACACCGTCAGCGATGATTAAGAATATCTTGGGAAGATTCGAATTTTCAGGTCCAAGTACAATAGGGTTGTTACTTTCGAGGAGGTCACACAGGAAGTTGAAGGTGTGAACAGCCTCCTCCTTGTCTTCATTCAAAGGCAGCCAGGACAGCCAGTGAGGGAGGACCTCATTGACATTGACACACTCAGGCCGGTACTTCATCACCTTCCCCACCGCCGAGATGCAGTTCTCAGTGGCGTTGACGTTCTCTTTGGCCTTCGACTCCGCAGCCTGGATCACTCCCACCAGAAGAGGAATGGCCTCTGGCAGAGAAGACATCCAGCGCACCATTAGATTAACACAGGAGAC

Function

symbol description
kpnb3 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within protein transport. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; immature eye; nervous system; neural tube; and ventral mesoderm. Orthologous to several human genes including IPO5 (importin 5).
ipo5 Enables RNA binding activity. Involved in ribosomal protein import into nucleus. Located in membrane.

NR:

description
PREDICTED: importin-5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89693 True 510 lncRNA 0.47 2 25590818 25591551

Neighbor

gene id symbol gene type direction distance location
AMCG00014650 NA coding downstream 191984 25397830 ~ 25398834 (-)
AMCG00014647 NA coding downstream 351232 25165946 ~ 25239586 (-)
AMCG00014645 NA coding downstream 447450 25130338 ~ 25143368 (-)
AMCG00014642 NA coding downstream 517108 25004505 ~ 25073710 (-)
AMCG00014641 sox21 coding downstream 629129 24960946 ~ 24961689 (-)
AMCG00014656 stk24,LOC103147175 coding upstream 118083 25709634 ~ 25729632 (-)
AMCG00014659 NA coding upstream 162297 25753848 ~ 25763919 (-)
AMCG00014658 dock9,LOC106586262 coding upstream 183418 25774969 ~ 25851971 (-)
AMCG00014663 NA coding upstream 309898 25901449 ~ 25901694 (-)
AMCG00014662 NA coding upstream 310353 25901904 ~ 26035827 (-)
G71727 NA non-coding downstream 57638 25530938 ~ 25533180 (-)
G71726 rap2a,LOC106512668,LOC106582448,LOC100695037,LOC103391592 non-coding downstream 81948 25508597 ~ 25508870 (-)
G71723 NA non-coding downstream 100167 25488226 ~ 25490651 (-)
G71593 NA non-coding downstream 1434670 24155730 ~ 24156148 (-)
G71591 NA non-coding downstream 1510071 24080548 ~ 24080747 (-)
G71835 NA non-coding upstream 435984 26027535 ~ 26028500 (-)
G71871 NA non-coding upstream 629643 26221194 ~ 26221397 (-)
G71873 NA non-coding upstream 643860 26235411 ~ 26235615 (-)
G71874 NA non-coding upstream 651993 26243544 ~ 26243813 (-)
G71875 NA non-coding upstream 674180 26265731 ~ 26266216 (-)
AMCG00014630 LOC107672672 other downstream 3345903 22225924 ~ 22244915 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 6365588 19217722 ~ 19225230 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other downstream 6387251 19201803 ~ 19203567 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 7568723 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 7969667 17589267 ~ 17621151 (-)
AMCG00014693 NA other upstream 1693869 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 1744144 27335695 ~ 27369527 (-)
G72236 rpl8,LOC107595836,LOC107748161 other upstream 2738188 28329739 ~ 28332482 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 3797739 29389290 ~ 29398305 (-)
AMCG00014775 NA other upstream 5249972 30841523 ~ 30846800 (-)

Expression


Co-expression Network