G71963


Basic Information

Item Value
gene id G71963
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26952296 ~ 26953253 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU89956
ctggtctcgttttaaaatgtattgatttgaatggaaacctgcttcggttaaattgatatcgttttaatgcaaaatgcggacaattaataaagttatggtcccgttcacaatttcacaatgcaatttccacgtgtagTTTGAACTATTTACATCATtttaactcattacttagcatAGACCTTTATGTGAACCAGCGAAATGTATCATAGatctatagatcgatatgacattcaagcAATACAGAGTCAATACTGTCTGTGTCGGTGCACGCGTTTACTCTGAGTTTACTCTgagtttactctgtgtttactctgttaattctgtgtttactctgagtttactctgtgtttactctgttaattctgtgtttactctgagtttactctgtgtttactctgttaATTCTGCGTCTGACGCGCATCtatgggggcggggcttgagttacATCACACGCTGACGCTCTCCACAGGCCAGGGCGGTATTATGAACATAGTATTATGCTGACCAAgtactttttatattattattattattattattattattattattattattattatgtacagtttttttaattatcttcaGCACATATTAACCACTTACCATCAGCAACCATAAGGTCCAGACCCTTTAGGGTTATATGCTTCTTGGACTCAGTATtagataatatttttttttcacagagcTACTGTCTAGTGGTTTTAACAGgtgaaaattaatgtttatacaagtgtttatttttgttttcaatacaaactTATGTattatgtgaaaatgtgtttgtttttttccgtTTCTACATTTTGTTCAATGCAAAGGTTGCATTAGTGCTTTTGTAAGAATAGCACCTTGAATGTGAGGTGAAAAAGCGTACACTCTCTATTTTTGcccaaagttgttttttttaaaataaacttttcatcAAATGTGCATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89956 True 938 lncRNA 0.33 2 26952296 26953253

Neighbor

gene id symbol gene type direction distance location
AMCG00014684 upf3a coding upstream 51482 26890732 ~ 26900814 (+)
AMCG00014680 NA coding upstream 62166 26886487 ~ 26890130 (+)
AMCG00014682 cdc16,LOC106581643,LOC107673708,LOC107597489 coding upstream 70500 26869226 ~ 26881796 (+)
AMCG00014681 NA coding upstream 86056 26859733 ~ 26866240 (+)
AMCG00014677 LOC107600373,LOC107569583,LOC107690616,LOC107748609,LOC107731761,LOC107681305 coding upstream 323589 26624761 ~ 26628707 (+)
AMCG00014683 asmtl coding downstream 13492 26966745 ~ 26974382 (+)
AMCG00014690 slc25a6,slc25a5,LOC107597494,LOC108426068,LOC107756767 coding downstream 24182 26977435 ~ 26980300 (+)
AMCG00014691 ppp2r3b,LOC108426065,LOC106581654,LOC100705877 coding downstream 368361 27321614 ~ 27337656 (+)
AMCG00014701 NA coding downstream 529835 27483088 ~ 27491264 (+)
AMCG00014705 NA coding downstream 749831 27703084 ~ 27714268 (+)
G71859 NA non-coding upstream 720731 26231219 ~ 26231565 (+)
G71826 NA non-coding upstream 941296 26010799 ~ 26011000 (+)
G71817 NA non-coding upstream 992594 25952233 ~ 25959702 (+)
G71784 NA non-coding upstream 1181807 25770209 ~ 25770489 (+)
G71763 NA non-coding upstream 1189554 25705458 ~ 25762742 (+)
G71995 NA non-coding downstream 73522 27026775 ~ 27027272 (+)
G72072 NA non-coding downstream 521811 27475064 ~ 27479444 (+)
G72169 NA non-coding downstream 1287313 28240566 ~ 28297484 (+)
G72173 NA non-coding downstream 1344416 28297669 ~ 28300813 (+)
G72208 NA non-coding downstream 1384038 28337291 ~ 28341717 (+)
AMCG00014687 NA other upstream 41059 26904877 ~ 26911237 (+)
G71525 NA other upstream 4096650 22855342 ~ 22855646 (+)
G71004 NA other upstream 8677936 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 9465246 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 10483087 16465621 ~ 16469209 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 882250 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 915450 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 1349120 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 1843796 28797049 ~ 28837910 (+)
AMCG00014739 NA other downstream 2294622 29247875 ~ 29256354 (+)

Expression


Co-expression Network