G72072


Basic Information

Item Value
gene id G72072
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27475064 ~ 27479444 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU90084
tTGGCATACAACATCCAACAGATCTACAAATGTGAATCTCCAGCTCAGTCGAAATAACGGGAATCTACCTCATCATATCCAAACAGCCAGAGCCGGGGAGTCTGGTAGTACTTGTCATAAGTGATGTAGAGGTCGTAGGTTCGAGTCTGTAGAATGGCATCTTCCCCTCCTGCATCTTTGGCTTTGTTAATTTCCACTACTCTACTGGTGTCCAAAGTTGCcTCATCCGTTTCCAGAAGCCCACTCTCTTCATATTCTTCCATGTCAGCTGGTTCTccttcatcatcttcatcatcatcatcaccacaAGCCACTGAGTGGGCATTCAGATTCATTTTTTCCTTATTGTCCAATGTGATTTCTCGGACCGCTTCCGTGACACCAGATACTCCTGAGTTGTGAAAGGTGTCCACCCAGCCTCCGTCCCCATCGTCCTCCTCTATGATGGCCTCCAGCTCATCTGAGTACTCCATCTGTTTACATCGCTTGTAGCACGGGACTTGCGTGTTAATAAAAACTGCCTATCCTTCGGCAAATATGGCTTCACCTTCGCTTCTTCCCCAGAAGCCCTACAAAAACATAACCCACAAGTTATTAAGTGACCCTACATTATGTAGCTACTTTATAACTCAATTTGATCATAATTAGCTCTTCCAAAGAACAGCTGTCAACAAGCCTGGAGGATACTGCCATGATGATACTTAATGGACGATTCGATATACCAAAATTAGATTGAAACAGACGGAATGCCTAGTGCAAAAGTACATTTCAAGTGTGTATTGTATTCACAGAGTAAATCTTCTAAGTTTATCATATCATTTAGTttatcatgtccagctcattctatttACAAACCAGGAATCAGAGATCGAAAAATATGCTGTGACGTCACCGGGGTGcgaactctggagctgctttgctgggagtcaatggagaaaatcagaaaagtcattaaaaaactaaaatgttatgACATTCGATGTGCTGTAGCCTACACGGCAGtgcatgtaataaaataataaaacttactccacagaatatgtttctactgaTAGAATAGCCTGAGATTTTGGGATTTTCTGTGGAGTTCCCATTTAATTGCATGCAAAATATTTCAGATAAAAGTTTAATTCTAGTctaaagtatgtttttaattagctCAGAAAAAGGCCAAGAGTTCTCAAGGCTCAagaggttgaaaataaaaatggccaCTTAACTTCCTGACTATGCTATTAGCCATACAGAGTGGTATAATTGCAGGGAAGATTAAGTTAGGCCAAAACTGAGATGTAGCAATGTTTTCCTGAAAAGATGtagtttaataaatgaaaagattaaacaaataacactcAGTTTTACACATTTCCCCTTTCCCTGGGGGGAAACAGTCACATGCACTCTTgcttatgaaatatatattatatattttacaactcTCCTCCACAGTGGAATGTACTTCTTGTTTGTAAGTTTCTGTTCCCTACCTCCTTGCCTTAGCACTCACCATTTCCATGTAGGGCAGTGATGGACGAGGTGATCCCCGGCTGCTACAAACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90084 True 1560 lncRNA 0.41 6 27475064 27479444

Neighbor

gene id symbol gene type direction distance location
AMCG00014691 ppp2r3b,LOC108426065,LOC106581654,LOC100705877 coding upstream 137408 27321614 ~ 27337656 (+)
AMCG00014690 slc25a6,slc25a5,LOC107597494,LOC108426068,LOC107756767 coding upstream 494764 26977435 ~ 26980300 (+)
AMCG00014683 asmtl coding upstream 500682 26966745 ~ 26974382 (+)
AMCG00014685 NA coding upstream 513187 26925834 ~ 26961877 (+)
AMCG00014684 upf3a coding upstream 574250 26890732 ~ 26900814 (+)
AMCG00014701 NA coding downstream 3644 27483088 ~ 27491264 (+)
AMCG00014705 NA coding downstream 223640 27703084 ~ 27714268 (+)
AMCG00014706 NA coding downstream 363946 27843390 ~ 27861363 (+)
AMCG00014708 LOC106586788,LOC107081331 coding downstream 412407 27891851 ~ 27918923 (+)
AMCG00014711 NA coding downstream 687589 28167033 ~ 28184530 (+)
G71995 NA non-coding upstream 447792 27026775 ~ 27027272 (+)
G71963 NA non-coding upstream 521811 26952296 ~ 26953253 (+)
G71859 NA non-coding upstream 1243499 26231219 ~ 26231565 (+)
G71826 NA non-coding upstream 1464064 26010799 ~ 26011000 (+)
G71817 NA non-coding upstream 1515362 25952233 ~ 25959702 (+)
G72169 NA non-coding downstream 761122 28240566 ~ 28297484 (+)
G72173 NA non-coding downstream 818225 28297669 ~ 28300813 (+)
G72208 NA non-coding downstream 857847 28337291 ~ 28341717 (+)
G72273 NA non-coding downstream 1047344 28526788 ~ 28578733 (+)
G72329 NA non-coding downstream 1352312 28831756 ~ 28831975 (+)
AMCG00014687 NA other upstream 563827 26904877 ~ 26911237 (+)
G71525 NA other upstream 4619418 22855342 ~ 22855646 (+)
G71004 NA other upstream 9200704 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 9988014 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 11005855 16465621 ~ 16469209 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 356059 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 389259 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 822929 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 1317605 28797049 ~ 28837910 (+)
AMCG00014739 NA other downstream 1768431 29247875 ~ 29256354 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032569 atg3 coding NC_007117.7 CM002890.2 7109954 ~ 7123210 (-)