G72175 (LOC102776245)


Basic Information

Item Value
gene id G72175
gene name LOC102776245
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28302373 ~ 28304073 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU90214
CCTGTCTGAGCACAAGCCATTAGGTCTCTCTTTGACTTGATGATTGGAATAGCATATTTCTGGACTGGAGTAGGGCGAGTGTAACGGCTAAGGTTGATATTGCCCATGATGATTTCTCCCATTTCAAGGTCACAGAAACTTTCAATATGTGGAGGGCATTCATTACCAGTGGCATCAACAGGAATGTCATCGTATTTCTCAAAGTTTATCCCTGTGTTGCTTCCAGAGAAGAGTTCATGCTCAAGTCGTTCATTTGGGGATGTTGGCTTAGACCAGTCCTCTTCATCACGGGCCGCATCCTCTACCCATCGGCTGTTTCCACCACCTTCCCTGGATCCAAATCCACCTCGATCAAATCTAATGCGATAGCAGTTTTCATTAGGTTATACATTCCCTATAGCTCTattgaaggattttttttttttaaatgtgatatcAAGGAACCAAGACCAGTCAGTCAAGTTTACATGGAAAATACAGTTTATAGAATCAAGCACCAAGTCTTAAACACAGATACATTTCTCACCTTCCTCTTGACCCAGATCCACGGTCATTGAAGAAGGATGATTTGCCTCTATCAGTACGCCCTCCAAAGCTAGTGTAGGGGTCTTTGGAAGCATTCCATCCACTACTGTCCTTATCGTAACCAAAGCCTtgagaaacatttcaatataatacattagGACTTTAACTACAATCTAGTAGACATGCATTCGGAATTAGGACTGCAAAACAGATGAACATTTTTGGGACGAGTTTTAGAAATGTGGTTtctcatttgtacattttgatcATAGTATCTGGatttaacattttatcatgATTGGAAGGGGAAATAAGGCAACAGGTGGTAAAGATGTGCTCTGTGAGGGTTTGAAACATTGTAACGGAGTGCAGTGCcatattggtttaaaaaaaattagaaGTGGACTGGTTAACTTTAgagataaatacaaaatgagttGGGGAATTTGATTAAAACCTATGCATTGCCTCAAACAAATGTAATCCAAACAATTAGAAAGGGATAACCCAAGGGTAGCTTTAAAATCCTTCAGGCCCCAGAACAATTTGAATGCATGAAATGCATGATCTTAAGGTTTCTAAAACGCGAATGTGGAATGGCTTGTTATAGCAGAAATGTCAAGTAGTGTCCAACAATGCGTCAGACAAAAGTGACAGGTTTAACCCTTTTCCAGGCTACTAGCAGAAGCCATAAAATTGGCTTCCCACCTGAGTTCTGCATTGGCTGCGACTGGTTAAAAGAGCCACCACTTCTGTTTCCACGGAACCCGCCACGCCCGCCTCGGTCACCTCGGTCACCTCGGGTGGCTCCTCTTCCTCCATAGTTGCCACGGTCTCCATTCATGCGATTATCCCTGCCATCGTGATATCCGTTGACAAAACCATTGCTGCGTCCATTGTCCCAACCAGGAGAATCTTTATGCAGAAGAAAAATAGATTAGCGAGTGGCCTGCAAGTATGCAACAGCTGCAACTACCACTTTGCAAAAGATTGAA

Function

NR:

description
PREDICTED: putative ATP-dependent RNA helicase an3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90214 True 1520 TUCP 0.42 3 28302373 28304073

Neighbor

gene id symbol gene type direction distance location
AMCG00014710 cask coding upstream 21649 28250926 ~ 28280724 (+)
AMCG00014709 cask coding upstream 66458 28222661 ~ 28235915 (+)
AMCG00014711 NA coding upstream 117843 28167033 ~ 28184530 (+)
AMCG00014708 LOC106586788,LOC107081331 coding upstream 383450 27891851 ~ 27918923 (+)
AMCG00014706 NA coding upstream 441010 27843390 ~ 27861363 (+)
AMCG00014714 rpl8,LOC107595836,LOC107748161 coding downstream 25724 28329797 ~ 28332468 (+)
AMCG00014721 med14,LOC106581951 coding downstream 103144 28407217 ~ 28441529 (+)
AMCG00014722 NA coding downstream 140903 28444976 ~ 28450107 (+)
AMCG00014720 NA coding downstream 152122 28456195 ~ 28483850 (+)
AMCG00014724 NA coding downstream 279396 28583469 ~ 28590960 (+)
G72173 NA non-coding upstream 1560 28297669 ~ 28300813 (+)
G72169 NA non-coding upstream 4889 28240566 ~ 28297484 (+)
G72072 NA non-coding upstream 822929 27475064 ~ 27479444 (+)
G71995 NA non-coding upstream 1275101 27026775 ~ 27027272 (+)
G71963 NA non-coding upstream 1349120 26952296 ~ 26953253 (+)
G72208 NA non-coding downstream 33218 28337291 ~ 28341717 (+)
G72273 NA non-coding downstream 222715 28526788 ~ 28578733 (+)
G72329 NA non-coding downstream 527683 28831756 ~ 28831975 (+)
G72341 NA non-coding downstream 614903 28918976 ~ 28921290 (+)
G72353 NA non-coding downstream 677049 28981122 ~ 28985576 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 422573 27868703 ~ 27879800 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other upstream 460502 27835503 ~ 27841871 (+)
AMCG00014687 NA other upstream 1391136 26904877 ~ 26911237 (+)
G71525 NA other upstream 5446727 22855342 ~ 22855646 (+)
G71004 NA other upstream 10028013 18271854 ~ 18274360 (+)
AMCG00014729 NA other downstream 492976 28797049 ~ 28837910 (+)
AMCG00014739 NA other downstream 943802 29247875 ~ 29256354 (+)
AMCG00014738 NA other downstream 964256 29268329 ~ 29279149 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 1539394 29843467 ~ 29846586 (+)
G72605 NA other downstream 1547377 29851450 ~ 29851821 (+)

Expression


Co-expression Network