G72208


Basic Information

Item Value
gene id G72208
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28337291 ~ 28341717 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU90255
GTACACTGATCCAAAGTCAAAAAAGATGCCTAACAGAAGCCACAATATTGAGGGCAACAAGTCTGATTTCAATGATAAAATCTGGAAACCCTGTACATCTTATCAAACCTCATCTTTACCAAATAGCTGATAACACCAgagtatgaaaagaaaaaggagccCAAAATGTATTTCGGTCTTTCCTCAAGTAAAATTTCCAAAATTCCATGTCTTTATAATGGCTCAGGACACCTACAATTTGCAtgctattttaaagaaagatgtaagacaaagcaattcaaaagaACAATCTTTAATTACCTCTTTCAACGCATTCTTCAAAAATGTGGATGGAGTTAACAACAAAAGGTAGGGAGCTTGCGGTTATTACAAAAACTTAAAAGGTcaaccttaaaaaataaaaattaaaaatcacttttttgcGTCAGTACTGGTATACAGACTAGTAatgttcaaaattattatttttttgcaacaaGGAAATGAGCACATCTTTCATTGTCGAAGTATCGCATCCACTTAAGCGGAGCACATAGGTACCCAACCAGGTCTGACGTGAGCAAGCTGCTGATCTAGTCCAATAACAATCTCATGCATTAACTCAAGAACCTCCCTCCTGTATTGAAAAATCCTTCAGGGCGCCAAGAACCGGATACTTCCATTGCTGCCACAAGGGGCCATGGGGAAGAGGCTGGGGGAGAAGAGTGGAGGAGCACATACTGCAAGTCATtcaaatactatttatttttctttctgaagtAGAACTTTACAGTGTGCTGGGTTTTTATTACAGTGCTCTAAGGCAGATCAAGGGATATCATCCATGCATGTTTCACAAAAGCtttagaataataattaaaaggaaaaaaaaaaagtcagaaggCAACCATCTGATTGGAgcaacacattaaattaaaaaagaaaagaaaaaaaaagataaggcCTTACAGGCTAAAAACCATGAACATTTTTGTGTCCCCTGAAGGAAACATGTGAACGTAAAAATCACCTGTAGTGTATTTTGTCTCACAACTTGGGGCTGGGaaagtggggtgggggtgggaccAAGTCTTTTATACAAAGCAGTAAAATCAGCTGCTGCACACTCTTTTGGTTCTTTAACTTGATGcagtccctccctctctggGGGGGCAGGGCTTTCCTTCTACTGGGACTGAAAGCTGGGGGGGTGAACTCTTCAGGCTTCCACAGCAGAGCAGAAAGTGATGCATCTCCATAAGCCACTTGTTTGGTTTTGGCAGACTTTTCAGGCTAACCCTTTCAAATCCATGCAATGTATAAATGGCATCCTCTGCTCTTTTCGGCAGGTCCCTCCTCTTATGGATTTGTTGCTCCCGTTCTTTGATAATCCATTAATGAAatgttgctattgtttttttttgttgtttcttttcttttcttacgTGCACGAAGTATTTACAATGTACCATAAATAAAGTATGAGACAGTTACAGTGTCGAtattccattttctttattcttgCTAAGGGGcgcaatgcttttttttttttttttttttttttttttttttttttttttttttttccattttgttgtttttttcagagaTCTGCAAGTCTCCTACAGCAACAGACAGCCTTGCTGAGGAGCTTAAACAGTCCAACATAAACATACTATATACACCTTTGCCATTTACACATTAGCGTCAGGCCTCTTTATTACAACACTATACACTTTCCACTGCAGGCGGGTTATATTTTGACAGCAATACTCTGCAGGGCAGACAGTGAATAGACTCTCCACTCcaggtaaaatacaaatagtttAATTGTGAACGTGAAGGACCTGGAGAATAGATGAACTGTAAGGCCTGGTCGTGCACTTGTACCAAGTGTCTTGATGGAGAGAATCGGATGAGAATCAGAGGAGAATCTGCCGTTTTTATTCTTTCGTCTGAGACGGAGGAGCCTCTTCACTGCTTTCCCAGTTTTCTTGTGCTCGTTGGCCTGTACGCTGAGGGTTGTTCATATGCTGTGCTGCTGGGCCTGTATATGGCTGACCATGCGTGTGATTATTCTGGAAAACAAGATGAGTGGGCTATTAggttgtattttataataataaaataataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90255 True 2113 lncRNA 0.39 2 28337291 28341717

Neighbor

gene id symbol gene type direction distance location
AMCG00014714 rpl8,LOC107595836,LOC107748161 coding upstream 4823 28329797 ~ 28332468 (+)
AMCG00014710 cask coding upstream 56567 28250926 ~ 28280724 (+)
AMCG00014709 cask coding upstream 101376 28222661 ~ 28235915 (+)
AMCG00014711 NA coding upstream 152761 28167033 ~ 28184530 (+)
AMCG00014708 LOC106586788,LOC107081331 coding upstream 418368 27891851 ~ 27918923 (+)
AMCG00014721 med14,LOC106581951 coding downstream 65500 28407217 ~ 28441529 (+)
AMCG00014722 NA coding downstream 103259 28444976 ~ 28450107 (+)
AMCG00014720 NA coding downstream 114478 28456195 ~ 28483850 (+)
AMCG00014724 NA coding downstream 241752 28583469 ~ 28590960 (+)
AMCG00014723 NA coding downstream 249361 28591078 ~ 28609187 (+)
G72173 NA non-coding upstream 36478 28297669 ~ 28300813 (+)
G72169 NA non-coding upstream 39807 28240566 ~ 28297484 (+)
G72072 NA non-coding upstream 857847 27475064 ~ 27479444 (+)
G71995 NA non-coding upstream 1310019 27026775 ~ 27027272 (+)
G71963 NA non-coding upstream 1384038 26952296 ~ 26953253 (+)
G72273 NA non-coding downstream 185071 28526788 ~ 28578733 (+)
G72329 NA non-coding downstream 490039 28831756 ~ 28831975 (+)
G72341 NA non-coding downstream 577259 28918976 ~ 28921290 (+)
G72353 NA non-coding downstream 639405 28981122 ~ 28985576 (+)
G72354 NA non-coding downstream 647890 28989607 ~ 28991299 (+)
G72175 LOC102776245 other upstream 33218 28302373 ~ 28304073 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 457491 27868703 ~ 27879800 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other upstream 495420 27835503 ~ 27841871 (+)
AMCG00014687 NA other upstream 1426054 26904877 ~ 26911237 (+)
G71525 NA other upstream 5481645 22855342 ~ 22855646 (+)
AMCG00014729 NA other downstream 455332 28797049 ~ 28837910 (+)
AMCG00014739 NA other downstream 906158 29247875 ~ 29256354 (+)
AMCG00014738 NA other downstream 926612 29268329 ~ 29279149 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 1501750 29843467 ~ 29846586 (+)
G72605 NA other downstream 1509733 29851450 ~ 29851821 (+)

Expression


Co-expression Network