G72354


Basic Information

Item Value
gene id G72354
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28989607 ~ 28991299 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU90429
catctcttgggatccattctttGCGccttgtaatgttttaaagttgCTTTAAGGTTTGCAGTGAATTTATGTTTTAAGGTGAGTCACCTGGCATTaagacacatacaaatataataagaaagcaaaacaaaagtcagAAGACATTGTATGGCTGccacacaaagcacacacacttGCTTTGGCCTATCGGTATTATCAGGAGTTCCACTGGGGATCCACAGACCACTGATTCAGTTCTCTCCTAACAGTGAAGCAAAGCCAGCGCCGCCACCTCCTTGCTGCCCATCAGATaatccacagacagacagagagctgTATGCGAAGCCCCCTGAGACCAGAGTCCCCCTCTGCCAGAGCTGCGGGCCAAGTCCTTGAGGAGGTGGTGGCACACACGGAGAAGGAGACAGACAGCCAGCCCGCAAAAGACACTTCATGGTGAGGCAAAGCTGGTCTGTGAGGATTCCTGTGCTTGCAGATTTGTCTCTCTTCTGGGATAAGCTGAGCTCCGTCTCACAAAGCTAGGTCCTGGCTGGCAGCCTGGTAAACCCACTAATAATATCGACAGCATTGaaacagaaggaaagaaaatgtgtccTCCTTCAACCCTTTGTTTGtgtgaattcattttttaatttggatg

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU90429 True 640 lncRNA 0.47 2 28989607 28991299

Neighbor

gene id symbol gene type direction distance location
AMCG00014728 gsk3b,LOC107559500,LOC107721573,LOC107551994,LOC107715908 coding upstream 72973 28905901 ~ 28916634 (+)
AMCG00014727 gsk3b,LOC107703010 coding upstream 98639 28881917 ~ 28890968 (+)
AMCG00014725 lrrc58,LOC106574305 coding upstream 210317 28767435 ~ 28779290 (+)
AMCG00014726 LOC103028151 coding upstream 223517 28695811 ~ 28766090 (+)
AMCG00014723 NA coding upstream 380420 28591078 ~ 28609187 (+)
AMCG00014734 NA coding downstream 104830 29096129 ~ 29110638 (+)
AMCG00014733 NA coding downstream 129652 29120951 ~ 29129042 (+)
AMCG00014737 NA coding downstream 316641 29307940 ~ 29321592 (+)
AMCG00014741 LOC106586690,LOC106582147,LOC106575755 coding downstream 392189 29383488 ~ 29398221 (+)
AMCG00014740 LOC107557921 coding downstream 409333 29400632 ~ 29421379 (+)
G72353 NA non-coding upstream 4031 28981122 ~ 28985576 (+)
G72341 NA non-coding upstream 68317 28918976 ~ 28921290 (+)
G72329 NA non-coding upstream 157632 28831756 ~ 28831975 (+)
G72273 NA non-coding upstream 410874 28526788 ~ 28578733 (+)
G72208 NA non-coding upstream 647890 28337291 ~ 28341717 (+)
G72409 NA non-coding downstream 145830 29137129 ~ 29137353 (+)
G72415 NA non-coding downstream 165726 29157025 ~ 29160425 (+)
G72426 NA non-coding downstream 200672 29191971 ~ 29192278 (+)
G72767 NA non-coding downstream 1845537 30836836 ~ 30837169 (+)
G72768 NA non-coding downstream 1850261 30841560 ~ 30844670 (+)
AMCG00014729 NA other upstream 151697 28797049 ~ 28837910 (+)
G72175 LOC102776245 other upstream 685534 28302373 ~ 28304073 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 1109807 27868703 ~ 27879800 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other upstream 1147736 27835503 ~ 27841871 (+)
AMCG00014687 NA other upstream 2078370 26904877 ~ 26911237 (+)
AMCG00014739 NA other downstream 256576 29247875 ~ 29256354 (+)
AMCG00014738 NA other downstream 277030 29268329 ~ 29279149 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 852168 29843467 ~ 29846586 (+)
G72605 NA other downstream 860151 29851450 ~ 29851821 (+)
AMCG00014777 NA other downstream 1773052 30764351 ~ 30812287 (+)

Expression


Co-expression Network