G72415


Basic Information

Item Value
gene id G72415
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29157025 ~ 29160425 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU90507
TTCAGTGTGAATTTGGTACACACTGTTATCACTGAGGAGAGATGtagctgtaattaaactgaCTTGCGTCTGACTTCACAATCCCAGAGGTGTTTGAATTTGCTGTGGTGTATTTGGGTGCTAGTGAAGCTGGCAGAGATCCGGGTGAGCTCAGCGCTCAGAGCTAACAGCAGTTCAACACGTACAGGAAGTAACAGTACATTTGCTATTTATCTTTCACATCCGTTCGTGCTAGAGGAGCCCTCCTGGTGTAGCCCGCTGTCAATCAGCCAGGTTAGCTCTCTAATGAAAGTGGGCCTGAACTCTCTTCAGGTCGATGATCTGTCTGTGTCCTCCATTCCTGCGAACCAGCGCTTGGCATGTGAATGCAGTCTGAGTTATGGGAAACTGCAACTCCAGGAAAAGgcACAGAAGATACAAAACAGGAGAAGGGACGGACAGTGACGATCAGAACAATGTAAGTGCAACTAATGCCCAGGCCAAATAcaaacttaataaataaatataaatatttc

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko04672 Intestinal immune network for IgA production
ko05310 Asthma

RNA

RNA id representative length rna type GC content exon number start site end site
TU90507 True 515 lncRNA 0.45 3 29157025 29160425

Neighbor

gene id symbol gene type direction distance location
AMCG00014733 NA coding upstream 27983 29120951 ~ 29129042 (+)
AMCG00014734 NA coding upstream 46387 29096129 ~ 29110638 (+)
AMCG00014728 gsk3b,LOC107559500,LOC107721573,LOC107551994,LOC107715908 coding upstream 240391 28905901 ~ 28916634 (+)
AMCG00014727 gsk3b,LOC107703010 coding upstream 266057 28881917 ~ 28890968 (+)
AMCG00014725 lrrc58,LOC106574305 coding upstream 377735 28767435 ~ 28779290 (+)
AMCG00014737 NA coding downstream 147515 29307940 ~ 29321592 (+)
AMCG00014741 LOC106586690,LOC106582147,LOC106575755 coding downstream 223063 29383488 ~ 29398221 (+)
AMCG00014740 LOC107557921 coding downstream 240207 29400632 ~ 29421379 (+)
AMCG00014736 cryaa coding downstream 271096 29431521 ~ 29437107 (+)
AMCG00014743 NA coding downstream 380106 29540531 ~ 29558701 (+)
G72409 NA non-coding upstream 19672 29137129 ~ 29137353 (+)
G72354 NA non-coding upstream 165726 28989607 ~ 28991299 (+)
G72353 NA non-coding upstream 171449 28981122 ~ 28985576 (+)
G72341 NA non-coding upstream 235735 28918976 ~ 28921290 (+)
G72329 NA non-coding upstream 325050 28831756 ~ 28831975 (+)
G72426 NA non-coding downstream 31546 29191971 ~ 29192278 (+)
G72767 NA non-coding downstream 1676411 30836836 ~ 30837169 (+)
G72768 NA non-coding downstream 1681135 30841560 ~ 30844670 (+)
G72769 NA non-coding downstream 1685737 30846162 ~ 30846421 (+)
G72783 NA non-coding downstream 1795480 30955905 ~ 30956284 (+)
AMCG00014729 NA other upstream 319115 28797049 ~ 28837910 (+)
G72175 LOC102776245 other upstream 852952 28302373 ~ 28304073 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 1277225 27868703 ~ 27879800 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other upstream 1315154 27835503 ~ 27841871 (+)
AMCG00014687 NA other upstream 2245788 26904877 ~ 26911237 (+)
AMCG00014739 NA other downstream 87450 29247875 ~ 29256354 (+)
AMCG00014738 NA other downstream 107904 29268329 ~ 29279149 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 683042 29843467 ~ 29846586 (+)
G72605 NA other downstream 691025 29851450 ~ 29851821 (+)
AMCG00014777 NA other downstream 1603926 30764351 ~ 30812287 (+)

Expression


Co-expression Network