G72472


Basic Information

Item Value
gene id G72472
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29350078 ~ 29351654 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU90574
aaacaGTAGGAACCCCAAATCCTATTTCCTCTGCTCTGCTTTATTAAcattacaagtttaaaaaaatatattttatattattattatgatctaAATCATGATCATAATTGAAACAACCGAGAGCAGCAAACAACAAATAGTAGAGGGAAATTCCTAATTATGGAAATGTCTTAAAATTTATAaaaatttgcattgttttgtcgAATCTCTAACCAAATGAGTCATGTTTCATTTGTGACCCCACACCTGAAAGCAAGAGGCCCCTCACTTCCagtaacatttaataataaactggAACTTAAAAAATGGCAAAATTAACACTCCACACAAGTTTCCTGTGAATGCCACCCCACACTCctttttgttgtcgtttttattttttttatttttctaagtaCTGTATTGGATGGGTCTGAGCTGTGTTTCTTCCTGTAAATCATGTTTCAACGATGGATCTAATCTTTACAGGGTTTAGTAATGAGTGTAGGGCCTAGTCCTGAgatatagatttgtattttttgtcataTCTCTTTAATTCTTGATTATCTAGGGAGTTGGAAAATATCAGTGATAGTCACTCACACAGTATTCACACAGATCTGTTTTTCATAGTatccaaacaaaatacatactaGCACATTATTCAGTTGGCAGAAACATGAAAACGTTAGATGTTTGGACAACATTTTTGAGTTTTGAGTACCATACAATGGTCCATTGCTATGATCAAAAGCACGGTTTAAATTTTTCACCATTGTGACCATTTTCATATGCCCTTTTCTATTGATTAATACACTGGTTATTTTTAGAACTACAAAGAAATGTGGTCAACTTTGATACAGTTATGGacttattaacttattttattgaGCTGTAGACTTGAGACCTCCAGTTAAAGATGTGCTCTGTGAGTTAGTTTTGGTAGAAGTTATTATATACAGACAAATGGATATGATTTTCTAGATGACAGTGTGTTCAAAACGGCAAAGTCACAGAATGATGGTGGAACAGAAAGAGCTGTACGGAAACCTCTTTTGATTGTATTACAGATCTGTGGTCAACATATGATTCATGAATGCATAGTGTAACACTTGAAGTCATGGTTAAGGTCTATGATGGTGACCTATTTGATAAATCCCCCCCACTCCAAAATGAAGtagatacagtacagtatttcagtttgcaaattgcacatttgtaattgtgaatatatgttttttagtCTAGAAGTTGCCCATTTGCAAGGctcacatatttataatgtgtttatgtaaGTATAGTGTGTTATCAATATACATCCTGTGAAATGTTGAGCAGCCCCCCAACCCAGCCTTATTGTTGTTGCCTGTTGCTCAGGAGGTTTTAAAATGCCTTCCCTGTCAACCTATCTGAGACCATTGTAATTGTACAGCTGCTTTGTGTTACACAGaatgtgattgtattttaatgtcaaggtatgtattgtaaaaaaaagattttatcaTGAAAAGTGCTCGCCATAAATACTTATGCTATGTtttaacatacatgtataattatgacaattaataaattaacaaatatctATTGTAATGCAA

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
TU90574 True 1577 lncRNA 0.33 1 29350078 29351654

Neighbor

gene id symbol gene type direction distance location
AMCG00014732 NA coding downstream 318170 29023778 ~ 29031908 (-)
AMCG00014731 NA coding downstream 337023 28995936 ~ 29013055 (-)
AMCG00014730 NA coding downstream 398726 28930365 ~ 28951352 (-)
AMCG00014718 NA coding downstream 855052 28494507 ~ 28495026 (-)
AMCG00014719 NA coding downstream 855592 28494106 ~ 28494486 (-)
AMCG00014735 NA coding upstream 94 29351748 ~ 29383448 (-)
AMCG00014742 sik1,LOC105911651 coding upstream 102388 29454042 ~ 29463876 (-)
AMCG00014744 NA coding upstream 138411 29490065 ~ 29507061 (-)
AMCG00014748 eif5b,LOC107567794 coding upstream 263867 29615521 ~ 29643703 (-)
AMCG00014750 NA coding upstream 298784 29650438 ~ 29651309 (-)
G72438 NA non-coding downstream 132045 29217780 ~ 29218033 (-)
G72423 NA non-coding downstream 161034 29188690 ~ 29189044 (-)
G72414 NA non-coding downstream 202910 29146843 ~ 29147168 (-)
G72370 NA non-coding downstream 355728 28925630 ~ 28994350 (-)
G72375 NA non-coding downstream 358858 28989465 ~ 28991220 (-)
G72495 NA non-coding upstream 69606 29421260 ~ 29423372 (-)
G72535 NA non-coding upstream 208884 29560538 ~ 29562066 (-)
G72530 txndc9,LOC107568936,LOC107668903,LOC106586783 non-coding upstream 295934 29647588 ~ 29649642 (-)
G72581 NA non-coding upstream 387553 29739207 ~ 29743212 (-)
G72629 NA non-coding upstream 595063 29946717 ~ 29947061 (-)
G72236 rpl8,LOC107595836,LOC107748161 other downstream 1017596 28329739 ~ 28332482 (-)
AMCG00014692 LOC107756725 other downstream 1980551 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 2045481 27285420 ~ 27304597 (-)
AMCG00014630 LOC107672672 other downstream 7105163 22225924 ~ 22244915 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 10124848 19217722 ~ 19225230 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 37636 29389290 ~ 29398305 (-)
AMCG00014775 NA other upstream 1489869 30841523 ~ 30846800 (-)
G73047 NA other upstream 2911513 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 3103652 32455306 ~ 32555945 (-)
G73127 NA other upstream 3245808 32597462 ~ 32619149 (-)

Expression


Co-expression Network