G72477 (LOC106598269,LOC101158751,LOC106586690,LOC103361283)


Basic Information

Item Value
gene id G72477
gene name LOC106598269,LOC101158751,LOC106586690,LOC103361283
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29389290 ~ 29398305 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU90580
ATCTACAAGAAGAGACCACCTTTGTCTTGCTGGAAAAAATAACTTCTAAGTAGCCTTAAGCCTTTTTGACATTTATTAGAAGAAATAACACAGGCTGTAGAAGCACtacaaagtttgttttattgagaaagcaagcttttttttttttcttaaaaaaagaagaaaggtaaCAAGTccaacatttcaaacacattttggtCATTGTAAGACTACAACAAATTCTATGTGGGTACGAACAATCTCATCTCTCCCTCAGAAACGGCCGGATCTCTCCCGATCCCTCGATCTTCTCCTCTCGCGGTCACGCCCCCCGCCTCCACCTCTGCCTCTGTCCCGGGAGCGGGAGCGACGTTCACGAGATCGCGAGCGAGACCGGTGCCTGAAAAGGAAGCGGACGCAGAGTTTTTAAAAGGCGTGCTGATGAGCCAAGGTGCTggcttttcaaatacaattttcatgGTAGCGGATATAAATCTGAGCTCGACTCACAAGTTTGTCCTCACACTGAGATGAGTTGTCTCGTCATAATTCCTTTTCCGGCGGCGACCATACAGCTCCCGACGGAGCTCCCGGGAAATGGGCTTCAGGTGCATGAAGTTGCAGAACCCTCCTCGAGTGCACTCCCCATCTCATACTGGCGACAGCAAGCTTCCCTGAAGTCTGTGACAGGTGAAAGCTCTGCATGAATGGGCTGCCCATTGAACCAGCGGTTATTTAAATCCATTACAGCCTTCTCAGCATCTTCCTCTCGACGGAACTTCACATACACGTTGCCAACCAAGTGATCCCCCAGATTGTCACAAACATTCATTTCTTCCACTTCCCCGTATTTCTCCTC
>TU90581
ATCTACAAGAAGAGACCACCTTTGTCTTGCTGGAAAAAATAACTTCTAAGTAGCCTTAAGCCTTTTTGACATTTATTAGAAGAAATAACACAGGCTGTAGAAGCACtacaaagtttgttttattgagaaagcaagcttttttttttttcttaaaaaaagaagaaaggtaaCAAGTccaacatttcaaacacattttggtCATTGTAAGACTACAACAAATTCTATGTGGGTACGAACAATCTCATCTCTCCCTCAGAAACGGCCGGATCTCTCCCGATCCCTCGATCTTCTCCTCTCGCGGTCACGCCCCCCGCCTCCACCTCTGCCTCTGTCCCGGGAGCGGGAGCGACGTTCACGAGATCGCGAGCGAGACCGGTGCCTGAAAAGGAAGCGGACGCAGAGTTTTTAAAAGGCGTGCTGATGAGCCAAGGTGCTggcttttcaaatacaattttcatgGTAGCGGATATAAATCTGAGCTCGACTCACAAGTTTGTCCTCACACTGAGATGAGTTGTCTCGTCATAATTCCTTAggtacaaagtaaaaaaaattaatccaCAAGTCGTGTTTGCAGTGTgaagtgtgctgtagtgtactTTCTGCATCCTCCTGCTTTCTTTTAAAGACAATTAACTTCACACAAAACCTCCCCACTACCTTCAGGAGTTTTCAGCTCTATATATAACTGGGTTGGTGTGTGGAACAGGGAGGAGCGGATACCAGAGTCTAGAGCTTAAAAcgtatgtgaaaataaaatgaaacatgcaTGACAATCCCTTTTTTTAACCAATGCCCTCATGAAGATCATGAGCCcatcaaaaacagacattaaaggcaataacaaatgtataatttcactGGTAAGTAGAAGATGGTTGAGGTCATCATTTCAATAAGTGCTGAAACTCAATGAAATGGGTTATTTCTCTTTGATAAAACTCAGACTTGTTTGACACGATTCCTAGCTGCAGTGTTAAACCCATACATTAGAGCCTGCCAAAGCCTCAATCTGTGGCCTAGCTGAAAAGTAACAACTAACAcagctttacaaaaaaaaaaaaaaaaaagtaaaacctaGACAGCTCTCTCATGGAattagaggagaaaaaaaagcaaaccaagAAAAGGTCTGTGTTCCTTATTACAGTATGAAGGATGAAGACATCTTTGAAGATTGTGGAGATCAGGTTCCCCTTTCAGAATCATCTGCCAAGTAAGATCTGAGTCCTCATAGACTGCTCAAATTGCCAGACACATACTAGAGTAAAACAGAAGCTGCTGGATGGGGAGTCTCTGATTCAAACACAGTCCAGCCTAGCAAGTCTGGTATAGCAAATATTAAGTCAACATCTGTCATTAAGCACCTTTAAATGGCTCAAATCTGGGAAatgagggagggggtgggttGCAATCGATTAAACCTGCATGGGTCCAAAGGTTCCTGCAGAATACGCTAAATACTTTGAAGTCAAAAACCTTTGATTGAAATCAAAGTTTAAAACCGAATGCAGAAAGAGGAAGCACAATCAAGTTCAAGGTTTCCTAGGCCAGATCTTAATgagtaacaaacaaaacaagaacaaaaccatCTACAGTATACATGAAAATGGAGGACTGCCAGCTCTTCATGAGGGACCTGTATTACGGAGTGCAGGCAGGGATCAACTCATTTGGCTTTCCACATCCACTGGTTACCATTGTAGGAGACTCCAGCAGCTTCCCATAGAGCTGCCTGTGCACCCCAGAACAGTGCCCCCCCCCAGACGGAGTCCGTCTGAATCCTGGCATCAAAAACAGATGTTTGCCAATTGTGGACAAATCCCTTCTTCCTTAAATAAATTCCCTCATACTGATAGAGGAAGAAGCTGGGGGTTCCAAAACCCCTATGAAATGGCGAATAACTTGATTATGGATGGGAGTGCCTTGCTTTTGCCAAGTAATGAGGATGCATCTATGTCATACTGAAGATTAACTTATTGTGCATTACAAATGTTCAGATGATGCAGCTATTTAGTACTTCCTTTTGTCAGTACATTTTGCACTTTAGTACAAGCAAATTTCCAAAAAGGCCAGCTGCTCACAAGCTTACCTAAAGAAGCTGCATTAGCAAACAAAAGTCAACATTTCCCAATTCTCTGTGGTTAATATTTTAGCAGGCAATTTGCTTTCAGAATTAAACACCTTGTGCTGCAGAGGCTGGAAAAATGTAGCTGTAGactaattttaatacattaagaGAACAAAATTGACAACATAAAAAATAGATACAGAAAGGGAGTCCCGCACTactattaattgaaaaataattatgagGGAGAGCACTTTACTTTGGATGTTTACTTCTAAGTTGCTACTTTGTGAATGGTGCCTACTGGAATGAAAGTGCAACATTTACTGTCAGGATAACTTATCTAGGGTTTCCTTTTACAGGAAAAAATACTTCTAGAAGCAAGATAATACTGATACGGCTTTAGAAAGTAGGAAAGAGGGAAGAGAGCAGTTGGTAAAGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90580 False 838 lncRNA 0.47 4 29395486 29398305
TU90581 True 2514 TUCP 0.40 2 29389290 29398305

Neighbor

gene id symbol gene type direction distance location
AMCG00014735 NA coding downstream 5842 29351748 ~ 29383448 (-)
AMCG00014732 NA coding downstream 357382 29023778 ~ 29031908 (-)
AMCG00014731 NA coding downstream 376235 28995936 ~ 29013055 (-)
AMCG00014730 NA coding downstream 437938 28930365 ~ 28951352 (-)
AMCG00014718 NA coding downstream 894264 28494507 ~ 28495026 (-)
AMCG00014742 sik1,LOC105911651 coding upstream 55737 29454042 ~ 29463876 (-)
AMCG00014744 NA coding upstream 91760 29490065 ~ 29507061 (-)
AMCG00014748 eif5b,LOC107567794 coding upstream 217216 29615521 ~ 29643703 (-)
AMCG00014750 NA coding upstream 252133 29650438 ~ 29651309 (-)
AMCG00014749 NA coding upstream 259968 29658273 ~ 29659385 (-)
G72472 NA non-coding downstream 37636 29350078 ~ 29351654 (-)
G72438 NA non-coding downstream 171257 29217780 ~ 29218033 (-)
G72423 NA non-coding downstream 200246 29188690 ~ 29189044 (-)
G72414 NA non-coding downstream 242122 29146843 ~ 29147168 (-)
G72370 NA non-coding downstream 394940 28925630 ~ 28994350 (-)
G72495 NA non-coding upstream 22955 29421260 ~ 29423372 (-)
G72535 NA non-coding upstream 162233 29560538 ~ 29562066 (-)
G72530 txndc9,LOC107568936,LOC107668903,LOC106586783 non-coding upstream 249283 29647588 ~ 29649642 (-)
G72581 NA non-coding upstream 340902 29739207 ~ 29743212 (-)
G72629 NA non-coding upstream 548412 29946717 ~ 29947061 (-)
G72236 rpl8,LOC107595836,LOC107748161 other downstream 1056808 28329739 ~ 28332482 (-)
AMCG00014692 LOC107756725 other downstream 2019763 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 2084693 27285420 ~ 27304597 (-)
AMCG00014630 LOC107672672 other downstream 7144375 22225924 ~ 22244915 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 10164060 19217722 ~ 19225230 (-)
AMCG00014775 NA other upstream 1443218 30841523 ~ 30846800 (-)
G73047 NA other upstream 2864862 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 3057001 32455306 ~ 32555945 (-)
G73127 NA other upstream 3199157 32597462 ~ 32619149 (-)
AMCG00014824 NA other upstream 3396700 32795005 ~ 32806295 (-)

Expression


Co-expression Network