G72495


Basic Information

Item Value
gene id G72495
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29421260 ~ 29423372 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU90604
AGATAAGACAAAATACTGTATTCAGGAAAATTTATTCAAAGCCAgatcatttttttcattgttgtaGTTGaagataaatgcatttaaaaatcaacaagaaCACAGCCAAAACCCACATCGCAGATGCCTTTTTAACCCACACAGAAATGGttatgaagaaacaaaagatGAACATGAGAAGGACAAGATCCAGAAGTTTGTCCGGTAGTGTTGTCCTGAGTTGTGCCAGGTCTGTGGTAATACCGGGATTGACATCACTTTCTACAATCAATTTGGTGAGGGAAAAGGGCAACCTAACTGCATAACTACCACCTGCCCTTCCCATTTCAATCTGAATTTGATTGAGCAACATAAcaaaaaatccttaaaaaagATCCTTAAAAGTAGTATTATAAGGGTGTCTCACTCTAACAAATGCTTTCTATAAATCCAAGAAAACACtgtatcaaaaaacaaaacaaaacaaaaacaacgtATCCAACAGGAAGGTCTCTTCAAAATACACGCTGTATGGAGAGGCCGTTTGAAACCCCCACTAAAAAGCACTACTATATCTTGTTTCAATACAAGATGGAAGGAAATCAAATGGCCCAAACAAATCTACATCCTGCCCAGCAAGGTCATTTTcgaagattatttttaaatgacagaacaGTGTTACCAAAATCACTTTAAGCAAAGTTCAGCTGTAGCTTGCTCACTGTCAGACACAGTAGTTTccatcataaaaaatataatgcacataATACTGGTGGTCAGTCTCCTAGGAAACATAGGCCACCATTTCAAGTTCAATCTTTGGAAAATTATGGAcagtcaatttgtttttctggtaAAGGAGCCTTTTTATGTTTCAGGGGGAGAGGTAACTTTGAAAATGCCATTTCCCCATTAAGGTTGAATGATTTGTATTGTCTACCGGTTCTATTAGTCACTACCGatgttaaaataagtaattcctAAAAAGTCTGTGACTTAAAAGTAACAAATTGAATGAAGGAGGTTCAACCATCCTGATTTTCTTTACCAGAAATTACAAATGCTCAGCCATTACTAACAAATACTTGCAAATAGATAAAAATAGGAATACTTATTGAAAAGGATGCATGTGATACAGGTATCAGATCATCTGCCTTTGGACAAATCATAATGATAGTCCTGGCTGCAACTCAAAATCCGAATCCAACAGAAACTGATTAGATGCAGAAATTAATTTACTGGGTCACACAATCTGCCTTGTGACCAGAAGCTTCTTAAATCAAATGGCACAAACTAGGTACagaagaacaaagtttacaaaatgagaggaggccataataaaaataaagaccttTTGTGTCACctttgtatttgattaatgtTACCCACATAAGAGTGTAGCTATCTTAGGGTGACTTCTCATTCAAGTCATTAAGAGAGCATGCCACTTTCCCCCCCTCGTAGAAAGTGTAAGCTACtgtaagaaagagagagataagaCTATACACAGGAATTATTACAGCTTAGAAGCAGCCTTATGCTGAAGGAAATGTCTCATGTGACTGTAGTTGCCCTAAATAAATTTCAGGGAGTCGTCAGAGTGACCGAAGAAAGTTAATTTGCAGTGATATATGGAATATATCGTTATTACATTATGCAAATGATTAACAgtaacaaaaaggaaaaaaggacaATAAAGATTTGAAGATGCCCTATTTTCTTTACAGTATGGAAGTGAAATGTCTGTCATTTTAGATAAATCATGTGACCTCAGATTTTTATGGAGTTTAGTACTTGATGAGGGCTATAGGCAGTGTAAAGGTAAGGGTTGCAATGGAGTCTACTTCTACAAATAAAGCATGAAGGTTTATTACATTCAGTATGGAATCTCTGTCATGCAGAGGCTTGTCAGGAGGCAGGCCCTTAGTTGTCGCCGTGCTCCTTCTCTTTGGCTGTGACATAGTTGAGGAGGTCGATGGCTGTCACCACGCCAAACACCATCTGCTTGTTGCAGGATGAGCCTTCGGCAAAGTCTGCAAGAGA

Function

GO:

id name namespace
GO:1901607 alpha-amino acid biosynthetic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90604 True 2022 lncRNA 0.37 2 29421260 29423372

Neighbor

gene id symbol gene type direction distance location
AMCG00014735 NA coding downstream 37812 29351748 ~ 29383448 (-)
AMCG00014732 NA coding downstream 389352 29023778 ~ 29031908 (-)
AMCG00014731 NA coding downstream 408205 28995936 ~ 29013055 (-)
AMCG00014730 NA coding downstream 469908 28930365 ~ 28951352 (-)
AMCG00014718 NA coding downstream 926234 28494507 ~ 28495026 (-)
AMCG00014742 sik1,LOC105911651 coding upstream 30670 29454042 ~ 29463876 (-)
AMCG00014744 NA coding upstream 66693 29490065 ~ 29507061 (-)
AMCG00014748 eif5b,LOC107567794 coding upstream 192149 29615521 ~ 29643703 (-)
AMCG00014750 NA coding upstream 227066 29650438 ~ 29651309 (-)
AMCG00014749 NA coding upstream 234901 29658273 ~ 29659385 (-)
G72472 NA non-coding downstream 69606 29350078 ~ 29351654 (-)
G72438 NA non-coding downstream 203227 29217780 ~ 29218033 (-)
G72423 NA non-coding downstream 232216 29188690 ~ 29189044 (-)
G72414 NA non-coding downstream 274092 29146843 ~ 29147168 (-)
G72370 NA non-coding downstream 426910 28925630 ~ 28994350 (-)
G72535 NA non-coding upstream 137166 29560538 ~ 29562066 (-)
G72530 txndc9,LOC107568936,LOC107668903,LOC106586783 non-coding upstream 224216 29647588 ~ 29649642 (-)
G72581 NA non-coding upstream 315835 29739207 ~ 29743212 (-)
G72629 NA non-coding upstream 523345 29946717 ~ 29947061 (-)
G72642 NA non-coding upstream 545283 29968655 ~ 29982575 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other downstream 22955 29389290 ~ 29398305 (-)
G72236 rpl8,LOC107595836,LOC107748161 other downstream 1088778 28329739 ~ 28332482 (-)
AMCG00014692 LOC107756725 other downstream 2051733 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 2116663 27285420 ~ 27304597 (-)
AMCG00014630 LOC107672672 other downstream 7176345 22225924 ~ 22244915 (-)
AMCG00014775 NA other upstream 1418151 30841523 ~ 30846800 (-)
G73047 NA other upstream 2839795 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 3031934 32455306 ~ 32555945 (-)
G73127 NA other upstream 3174090 32597462 ~ 32619149 (-)
AMCG00014824 NA other upstream 3371633 32795005 ~ 32806295 (-)

Expression


Co-expression Network