G72530 (txndc9,LOC107568936,LOC107668903,LOC106586783)


Basic Information

Item Value
gene id G72530
gene name txndc9,LOC107568936,LOC107668903,LOC106586783
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29647588 ~ 29649642 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU90650
attaaagtacaCACCAATCTAAAACTGAACCCTTATGCTGAAATCCAAGTTGGAAGGgggatttttctattttatttttaaagattgcaCTATGCTGGTGGCACCCTTGGCACTTGTTTGCTACTAATAACCAGCTGAAGAGCAGCAGCTCTTAATATTAATACGACAAAAAGCAGATTATTATGAGTGTTTGCATTTGGTCATGTGCAATAGATTTAAAATTAGTTACAAGAAAACAACTGGTAGAAAACTTAAAACTAAGGGCAACttaattcaatgttttgtttctccatGGATTGCAGAAACCAGTGGGCAGTAGAGCAAGCTGGTGTTTTTGCCAAGGAAAATTGATTTTCCAAAACAACTTGTTTTCAAAATGGCACAATACTCATTATACAGTTTTGAGATCAGCCATGGATACTTTAGAATTTGTCAGAGACTGAGCTGAGCACTCTTGCTTAAATCTGGCTCCTGAAGAAATAGCCAATCTGGTCTCCTCTCCTTGCCATCAACATACACCATATGCTCTGCCCAATCAGGAAAAGATACAGTTCAGTAGCTCAGCATCTCATTAACTTAAAGATGATCTACACAGGTGTCAGGGCAGTAGGTCACCAGGATATTGGATTAGGGAGGATTCCAAAttaaggcaaaaaaataaagtcagtTTCTTATATATTACACAAGATCGTTTCCCTGGTACTTCTAGGGTTTCTGTACCAATTGATCAAAGAAAGAACACTCTCCCTTTTATGAGTTATAAAACCTCAAACATGGggaaaagattaaacaaaaaacatacagtcTATGAtgtcaacacaaaaaaacattgaaaactgagatgttacattttaaacatttaatctggtacaacatcaaaatatatattgaaggTTAAGTCCATGGAATTGGAAAGAAATCATTGAATACAGATCCAAAAGActgcagacaaaacaaagaTGGTTTGAAAAGGAAACCGGATGGCGTATATGGAACGCCACAGATATTGAGAATGAGGACTATGAAGCACAagtgagagagaggtggggggagggggtgtggaGCCTTGGAGGACAGGAAGCCATTGCAGTCTAGTTGTCATCGTCAGAGTCGGATTCATACCCTCTACCCCGTATTGTCTTCTTCTCTACCTTCGTGAACTTTGACTTGGGCTTCTGTCCCTGAATGGGAGGCTCCATCAAATTTCTGTAGTTAATGATTTCTGAGCAGCCCAAACGCCATTCTAAGATTTCCGTCGTGAACTCATCCGTGTTCCCCAGATCAGTGAAGCCGACCACGTAATCTTTGGTCTTGCCGTCCTTCACCAGCGCCAGCGTGGGGATGACTTTGACGCGCAGTCTCTCGGTGAGGAATGGAGCCTTCTCTACGTTCAGCTTAATGAACTTCGTCTCCAGGTGTTTCTTGGCCAATATGGTTAGGTGCTTGTCCATAATTTTGCA

Function

symbol description
txndc9 Orthologous to human TXNDC9 (thioredoxin domain containing 9).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90650 True 1460 lncRNA 0.40 2 29647588 29649642

Neighbor

gene id symbol gene type direction distance location
AMCG00014748 eif5b,LOC107567794 coding downstream 3885 29615521 ~ 29643703 (-)
AMCG00014744 NA coding downstream 140527 29490065 ~ 29507061 (-)
AMCG00014742 sik1,LOC105911651 coding downstream 183712 29454042 ~ 29463876 (-)
AMCG00014735 NA coding downstream 264140 29351748 ~ 29383448 (-)
AMCG00014732 NA coding downstream 615680 29023778 ~ 29031908 (-)
AMCG00014750 NA coding upstream 796 29650438 ~ 29651309 (-)
AMCG00014749 NA coding upstream 8631 29658273 ~ 29659385 (-)
AMCG00014756 unc50,LOC107672653 coding upstream 185609 29835251 ~ 29841157 (-)
AMCG00014755 NA coding upstream 193782 29843424 ~ 29852958 (-)
AMCG00014759 NA coding upstream 265613 29915255 ~ 29940883 (-)
G72535 NA non-coding downstream 85522 29560538 ~ 29562066 (-)
G72495 NA non-coding downstream 224216 29421260 ~ 29423372 (-)
G72472 NA non-coding downstream 295934 29350078 ~ 29351654 (-)
G72438 NA non-coding downstream 429555 29217780 ~ 29218033 (-)
G72423 NA non-coding downstream 458544 29188690 ~ 29189044 (-)
G72581 NA non-coding upstream 89565 29739207 ~ 29743212 (-)
G72629 NA non-coding upstream 297075 29946717 ~ 29947061 (-)
G72642 NA non-coding upstream 319013 29968655 ~ 29982575 (-)
G72646 NA non-coding upstream 404698 30054340 ~ 30055173 (-)
G72659 NA non-coding upstream 517075 30166717 ~ 30166926 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other downstream 249283 29389290 ~ 29398305 (-)
G72236 rpl8,LOC107595836,LOC107748161 other downstream 1315106 28329739 ~ 28332482 (-)
AMCG00014692 LOC107756725 other downstream 2278061 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 2342991 27285420 ~ 27304597 (-)
AMCG00014630 LOC107672672 other downstream 7402673 22225924 ~ 22244915 (-)
AMCG00014775 NA other upstream 1191881 30841523 ~ 30846800 (-)
G73047 NA other upstream 2613525 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 2805664 32455306 ~ 32555945 (-)
G73127 NA other upstream 2947820 32597462 ~ 32619149 (-)
AMCG00014824 NA other upstream 3145363 32795005 ~ 32806295 (-)

Expression


Co-expression Network