G72581


Basic Information

Item Value
gene id G72581
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29739207 ~ 29743212 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU90712
AACAAATATGTCAATCAGTAGacttttaatagttttgttttgtacaaattGTGCTTGTCCGTCCAATGTCTCATACCAATGGCCAgcatgattacattttttctccCTTAGTGCAATAATTTGACATTGGAGGCCACAGAATAACTGCATTTGAGCTACAAATTGTAATACCACTTTGTGTGCAAACAACACTGTACCAAACAATTCCCAAGTCAGTTTAATTTCTATATAGCGTAATTTTCAAGTGTAATACACATCACATTCATCAGCTATTAGTCTGGTGGCCTGGGATATTTGTTATGcgcgcacacatacacacacacacacacacacacacacagatatactaCATGCAGATTGGGCATTGCCAGAGCAGGGCTATCTTTACAGAAATGGCACAGAACATTCTAGATTCACCTGCATTAATTTCACTTCGGGTTAATCTGATTCTTCTTTGACAACTAATTTCATTTGATTGTCCAGTTATTCGTAAGAGAATAGTGAAATTGGTTTTGCAGAATTAAACCGGGTAAGTGATCTTAACTACATTAAATCCAGACAAATGAGGATGGCTTTACTTGGCATTTAAGTTGATTTCTtgcttcaaaatgtaaattaaaattcagAGCCAGCATTTGCACCTCAGCCCATTTGTGGTGaggttttgtgaaatgtgaatcctaataagaacaatatctgattaaaaacaaaagttaaatgcAGTACTGTAAGTGCTCCTGTAACCATTGTAGAATTTGACATGTAGGGCGTTTGTCAGTTTGAAGAATATGGACCATTGCTAGACATAGGGGGCTGTAGCAGTAGCactcaaaatgcatttacattatgAGTAAGCGAGGAGTAACGCAGGGGTTGTCAAGCGCATTGCCCTATTCCTGGAAGAAATGCAAGGCTCTCGTGACAGGGGTGTCAGCGTACTCTAGACACAGGACGGGTGTCCAGTTTTGTGCCGAGCATGAGGTCACAGAGAGTCTTCTGTTTCCCTAAAGCTGTTGCTAAAGACGTCATGGCGaccctctctctcagctttcACAGGCCTGGTCTAATGAAAGGCAACACAGTGCCAATGATTATAACAGCCTGTGTACAGCGCACAGGATTCAACAGACTATTTCCGGCAATTATcttcacacacaatacatttaaattataccCAAACTTGAGGGATTATAGAAACGCATTAACTCTTTTGCTTCCTGATAGGACTGCAGAGCCCCCTGGTGAATTTGGTGTGGAATTAAACAATGTGTGGGAAAATGAcactataataatatttacagacCTTCTCCCATGTAAAACTGGCAAGTAGAAAAATCACTCTCTAGTGTGCAAATGTGAGGAGGTGTTGGATCTATAACCAAGTATTGGATGCACTAGACCATTTCAGACCCATAACACATACCAGAACATTACAGCATCTATGGGAAGAGCAAGATAGACAGATGGTGGACTCTAAACAGAGCATTTCTCAACACAGACCAATGTTAATAGATCCAGGGTGTTTAGGATTTCTCAAGAATCCTCTTTACAAACAGATAGCTGCTTGATAAACACATCATGCCAAATACCttcctttcatttgtctgtGAAACTATACAGTTGCTACCAGAAGTATTCAATTAAAACCAATgcaggagtaaaaaaaaaaagaatgttaaaagagcaacaaaacaagcaaacattttttaaggCATTCATATTATTGTGTTCACACTTCATTGgtgccacacacacaatcatctCAACATAATTGCAGTGTCTTCTTTTTGTGACCTTGGAGAGAGAGTATTCATTCGTTATTCGATTGAACATCACTCAACTGAATCACAGCAGTGGCAtaagttattattatgactaaATACCAGTACGCCGCCACAGGgtattttccattcatttgGTTTGAGGTTCATGCACACCAATCAACGAGTGAGTTGTAAATTCATTATTCTTAGCGAAACAAGCTTACAGTTGAATCAATAGCAAAAACTATACAGCAATCGATTGTTCAACGCATATGCCATGTTGTTCATTTGACTAAAACCCAGCCAAGCTAAAAATGCTACAAATCAACAttatatatagcatatatatgtgtacttGGGAAACAGTatggatgcattttttttaatgttaaaatactcTAATCCAATCttacaataatttaaagctGTGGttccatataaaataatgttaaaccaAACATTCAGATGTATGTTATAAAATAAGTAGTGCTTAATCCTTTTTGTTGTGTCCAACACAAGTGCCAACTCATTGCAGGGTAAGTGCAGAACTGGATCACTGAAGCCAGGACTGAGTTTCACACCTGCTGCTGCAGAGGTGTTTATAGGGGTCCAGGTAATAACAGATTTAAGATGATTAGTGATGAATTGCTTTAACCCAAACCTGAGGGGCAATTATACCCTCACATTAAATTACAGCTGTTTCAGAAGCTGAAACTATAATTAGAGGCAAGTTTGCCAAATTGCAATCACAAGTATGCTGCCATAGCACAGGTTTACATATTCTAGTTAACCTCAGGCTCATTAATGTAGAAACAAACTGCATAACTTTGATTTGTTCACATAAAAAACAGGGCCACCATGACTTAATTTCATTAAGCTTGCTGTGTATTTTATCTAAGGATCATGAGCTCCTTGAATTCACTGTCTGAGAGAGGACAGTCCTCAGGCTTCAATACTTTGCCATTCTGTGTCATTTGGTCGTACTGCCACAACACTAAGGGGTCTGCTACCATTCACCTACTTGGCTGGATGAAGCAATTCTCAACTCTACATGATAGGGTTGTAATTGGATTGCTGGTCACTGAACATGGTCCCCTGTTAGATTCCTGCTGTCAGTTTTGATTTGCTGAAGCTGCTACTACAAATGCTGCTGAAATCTGATCTGTGTTTTATCAAAGTCGGAGATTCTAGACGAAGCaagaaacatacatatttaagtaCAGGAGTAAGTGAACTGTAATTGATTAAAACAGCCATGAAACCTCACTGTAAAGTGCTTTGATACTGTTcccacctatatatatatatatatatatatatatatatatataaaataacagaaagacTGATTGAATGAGCAGCACTGTGTACTCAGACTACCACATCTTCATTGCCTTGAAGACAGGCTGTCCTTATTTCGCAGTGGTTGGGTATCCAAAATGCCTTCTGATCTGTTCTGGACACGGTCTGCTGGAGTGAAGCCGGCAGGAGTGGGTGGATGTTTGGCAAAGAATTTGAAGACTTTTACCATCCACTCTGAATACCTATTAGTGGCTGTGAACTGGAGTAATACTGAAACACTGGGAGGAGAGACTGTTGTGTTTGGCTAGCTGAAAGGAGCAGACCAAGTCTTGTAGGACTTCAGTTGGCCTCAGTGATCTGTAGGCCCACCTACAGGTGATTTTCTGTAGTCATGGCTGATTGGTATTAAGTCTCATAAGTATAGGGCCAGAAATACAGTACAGCTCTGCACCTTGAatacaattcttttttttttttttttttttagacaacTGAAATGTAGTATGGTGTCACAATAAGGTAAATACTACTGAATGTATACAAGAATTAGAAACTcgcaactgaaataaatatttctttaCACAGGTGGCATATCTGGTCACCCAAATGTATAGAATAAAAGCTCTCCTTTTCTCAAAAGTCTTTGTGGCAAAACAGACCTATTTCTGGTAATCCTGACATATGAATGCTAAATGTTATTCccagcagagacagagaaaagcaTTGTGTGTCAGAGCTCATAACAGTCATAGCTCTTAATAACAGGTTGGGGTTATCTAGGTGGCCTAAGAGAACCACCACTAATCAATCCCTCTTTCTctgttaaataaaagtaattctGGATCAAGAATACAAGGTGCCAGTGAACTGCTATATCTAAACCATGCCTACTCCACACAGGTGTTGAAAGAACCAAG

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU90712 True 3982 lncRNA 0.38 2 29739207 29743212

Neighbor

gene id symbol gene type direction distance location
AMCG00014749 NA coding downstream 79822 29658273 ~ 29659385 (-)
AMCG00014750 NA coding downstream 87898 29650438 ~ 29651309 (-)
AMCG00014748 eif5b,LOC107567794 coding downstream 95504 29615521 ~ 29643703 (-)
AMCG00014744 NA coding downstream 232146 29490065 ~ 29507061 (-)
AMCG00014742 sik1,LOC105911651 coding downstream 275331 29454042 ~ 29463876 (-)
AMCG00014756 unc50,LOC107672653 coding upstream 92039 29835251 ~ 29841157 (-)
AMCG00014755 NA coding upstream 100212 29843424 ~ 29852958 (-)
AMCG00014759 NA coding upstream 172043 29915255 ~ 29940883 (-)
AMCG00014758 NA coding upstream 206819 29950031 ~ 29951305 (-)
AMCG00014762 rabl3,LOC107659889,LOC107595844 coding upstream 468926 30212138 ~ 30217061 (-)
G72530 txndc9,LOC107568936,LOC107668903,LOC106586783 non-coding downstream 89565 29647588 ~ 29649642 (-)
G72535 NA non-coding downstream 177141 29560538 ~ 29562066 (-)
G72495 NA non-coding downstream 315835 29421260 ~ 29423372 (-)
G72472 NA non-coding downstream 387553 29350078 ~ 29351654 (-)
G72438 NA non-coding downstream 521174 29217780 ~ 29218033 (-)
G72629 NA non-coding upstream 203505 29946717 ~ 29947061 (-)
G72642 NA non-coding upstream 225443 29968655 ~ 29982575 (-)
G72646 NA non-coding upstream 311128 30054340 ~ 30055173 (-)
G72659 NA non-coding upstream 423505 30166717 ~ 30166926 (-)
G72680 NA non-coding upstream 467930 30211142 ~ 30211396 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other downstream 340902 29389290 ~ 29398305 (-)
G72236 rpl8,LOC107595836,LOC107748161 other downstream 1406725 28329739 ~ 28332482 (-)
AMCG00014692 LOC107756725 other downstream 2369680 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 2434610 27285420 ~ 27304597 (-)
AMCG00014630 LOC107672672 other downstream 7494292 22225924 ~ 22244915 (-)
AMCG00014775 NA other upstream 1098311 30841523 ~ 30846800 (-)
G73047 NA other upstream 2519955 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 2712094 32455306 ~ 32555945 (-)
G73127 NA other upstream 2854250 32597462 ~ 32619149 (-)
AMCG00014824 NA other upstream 3051793 32795005 ~ 32806295 (-)

Expression


Co-expression Network