G72815 (LOC103352915,LOC107742653,LOC105893249,LOC107739823,LOC107667646,LOC107552369,LOC107700101,LOC108434690)


Basic Information

Item Value
gene id G72815
gene name LOC103352915,LOC107742653,LOC105893249,LOC107739823,LOC107667646,LOC107552369,LOC107700101,LOC108434690
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31278087 ~ 31287434 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU90997
cttcatttgtttaattaaaaataatcgtTTCAGGCagtgttcttttttgttttttttaagatagaCAGGAGTGTGcgataattaaattatgaaggAAGAAGTGGATCTTTATTAGTAACTCTGGACACACTGATAATGTACATGTCTCTCTGCCAGTGCATTCAAAGCttccttacaaaaataaatccatacaaaGTAGCCACAATCAGAAACTGAGAAGGTTACCATTGTTTAtagttttacaaaatatacattccaTTCTTTTAAGGGGAGAGGGACTTTTTTCAAGACCCATATATACTTTCATGTAAGGTATCTGTTTGGACTTAAAACCACATATTTTAAACAGCCCCCAAACagtaaatatgcaaaaaaatattttaaaccaataaacacATGATGTCTGTTCCTATATGTACAAGCACAATATCCTGCCAGTATGCTTTGCAGGACAGACTCcagacattaatttaattaaagcagttCCACATGCCTAAATTAGAGACAGTTGTGATTTGCTGTCAGCTGTTTTAGGGGATAtctgttcttgttttgattCTGTCATTTTCAGTAAAGATAAAGAGAAGTactaaaatgtacacaattctCAAAAATATTGTCCAAAGGTTGATTAATCAttttctcgtttttttttttctgatattaCTCCAATTGACAGGAGCACCTTGTTTTAACCCGATTCTTACAATGAGACGGATCTTTCGACAATCCAAAAGACACATCACGCTTTAGCCCTTAACCCAGTTCAGACAATCAGACTCTCACACATGACCAATTTGAGATTTGATTATAAACCTTTTCAATTTGGCCTTTTTCCAATGTATTGAAGGCTTTTGTTCTGAAAGCCTGGCTCTTTGCTGTGGTGGATTTGAATCAGCTGAGGCGGTGATCGAATCTGGCTGTTATCTGCGTGAGTGTTAAATTTCCCTTTGGGTTCACCACCATATTGAACTAATCCTGAATTTGATCCCATCACTTGCCAGATGGCTTATCACTGGCTGCCTCATTCAGACAGGTCTTCATGTTTGTCGAAAGAACAGTACTCAGAGTCTCCCGCCAGACATTTGGAAGTTGCCAGTTTTTTCTGAAGTTAAGTGTTGGTAGAGAACCACTCTATGGACACATCATGAAGTGTGAACCAGGCTTTAGGTATCAGAATCCAGCTGCGAGTCAAAAGTCACTGGATTCTGGCCAATTGGAGGGTTAATCATCAtcgtcatcctcctcctcttcgtcttcatcctcatcctcctcctcctcctcttcgtcTTCATCCTCATCCTCTTCGTCCTCATCCTCTTCGTCCTCATCGTCCTCCTCCTCGTCGTCATCCTCCGTGTTCACTTTCCCTGACAGCACGTCCTCAATCCAGTCCTCCAGCTCCTGTGCGCTGGGCAGATCCTCATCATCTGCCAGGTCCATCCACACGCTGTCAGCATCAGTAACATTCACCACTCCAATCTGAGGCTTGAAGAGGTCGATTTTGAAGGTTTTCTCCCAGTATGTAATCAGCAGTGGAAAGTCATCTGGGTCAATCCACACAATGCTCAGTTCTGGGTTGTTGGTGTTCTCCCTGGCCACTTCTTTCAGGATCTCAAGGAACTCAAAGCCATCAGGATCCTCTGCCTCTGCAAAAGCCACAATATGAATTCCATCCATGTCGTCTTCCCATGTCTCAAACATGTCTTCTGCACGTAGCTTTCTCAGGGTAGGTCTTTTGTGTTCATTTACAAACTCCACAATCTCCTCTTCTGTGTATGGCTTTCCAGGAATGGTCACGGGTTCCTCCATGAAAGGTTCATAGAAGTCCACCTCGTTCATTTTCAAAGTAAGTTGTTTTGCCACCTGAAAAACATCAAATGGCACTCTATTTCAATGCACAGGCAGG
>TU90999
cttcatttgtttaattaaaaataatcgtTTCAGGCagtgttcttttttgttttttttaagatagaCAGGAGTGTGcgataattaaattatgaaggAAGAAGTGGATCTTTATTAGTAACTCTGGACACACTGATAATGTACATGTCTCTCTGCCAGTGCATTCAAAGCttccttacaaaaataaatccatacaaaGTAGCCACAATCAGAAACTGAGAAGGTTACCATTGTTTAtagttttacaaaatatacattccaTTCTTTTAAGGGGAGAGGGACTTTTTTCAAGACCCATATATACTTTCATGTAAGGTATCTGTTTGGACTTAAAACCACATATTTTAAACAGCCCCCAAACagtaaatatgcaaaaaaatattttaaaccaataaacacATGATGTCTGTTCCTATATGTACAAGCACAATATCCTGCCAGTATGCTTTGCAGGACAGACTCcagacattaatttaattaaagcagttCCACATGCCTAAATTAGAGACAGTTGTGATTTGCTGTCAGCTGTTTTAGGGGATAtctgttcttgttttgattCTGTCATTTTCAGTAAAGATAAAGAGAAGTactaaaatgtacacaattctCAAAAATATTGTCCAAAGGTTGATTAATCAttttctcgtttttttttttctgatattaCTCCAATTGACAGGAGCACCTTGTTTTAACCCGATTCTTACAATGAGACGGATCTTTCGACAATCCAAAAGACACATCACGCTTTAGCCCTTAACCCAGTTCAGACAATCAGACTCTCACACATGACCAATTTGAGATTTGATTATAAACCTTTTCAATTTGGCCTTTTTCCAATGTATTGAAGGCTTTTGTTCTGAAAGCCTGGCTCTTTGCTGTGGTGGATTTGAATCAGCTGAGGCGGTGATCGAATCTGGCTGTTATCTGCGTGAGTGTTAAATTTCCCTTTGGGTTCACCACCATATTGAACTAATCCTGAATTTGATCCCATCACTTGCCAGATGGCTTATCACTGGCTGCCTCATTCAGACAGGTCTTCATGTTTGTCGAAAGAACAGTACTCAGAGTCTCCCGCCAGACATTTGGAAGTTGCCAGTTTTTTCTGAAGTTAAGTGTTGGTAGAGAACCACTCTATGGACACATCATGAAGTGTGAACCAGGCTTTAGGTATCAGAATCCAGCTGCGAGTCAAAAGTCACTGGATTCTGGCCAATTGGAGGGTTAATCATCAtcgtcatcctcctcctcttcgtcttcatcctcatcctcctcctcctcctcttcgtcTTCATCCTCATCCTCTTCGTCCTCATCCTCTTCGTCCTCATCGTCCTCCTCCTCGTCGTCATCCTCCGTGTTCACTTTCCCTGACAGCACGTCCTCAATCCAGTCCTCCAGCTCCTGTGCGCTGGGCAGATCCTCATCATCTGCCAGGTCCATCCACACGCTGTCAGCATCAGTAACATTCACCACTCCAATCTGAGGCTTGAAGAGGTCGATTTTGAAGGTTTTCTCCCAGTATGTAATCAGCAGTGGAAAGTCATCTGGGTCAATCCACACAATGCTCAGTTCTGGGTTGTTGGTGTTCTCCCTGGCCACTTCTTTCAGGATCTCAAGGAACTCAAAGCCATCAGGATCCTCTGCCTCTGCAAAAGCCACAATATGAATTCCATCCATGTCGTCTTCCCATGTCTCAAACATGTCTTCTGCACGTAGCTTTCTCAGGGTAGGTCTTTTGTGTTCATTTACAAACTCCACAATCTCCTCTTCTGTGTATGGCTTTCCAGGAATGGTCACGGGTTCCTCCATGAAAGGTTCATAGAAGTCCACCTCGTTCATTTTCAAAGTAAGTTGTTTTGCCACGACTTTATCAAAAGTGGCAAAGAACTTAATAAATGGCTGAAAATTTTCTGCTGCCTCTTGAAACGCCTTGAAGTGCTCAGAGTCTTCTCCTTTGAAAAACCCAATGAGCTTGATGGCCTCATCAATACTGTCGAAGGCCCTGAGTTCCATGGAGTTGCTAATGAGCTCCACAGGGTCTTCCAACAGATCCAAAAGGAACTCAACAAGAGTGTCTGCAGAGAGCTCCCCATCGAACTCGATCACCCGTTCGTCTTTGAACACGTAAATACTGCCTTCTTCTTCCAGGCCAAGTTTCTTAGCCACTTTGGCATCTTTCTTGGAATCTACCATTCCAAACC

Function

NR:

description
PREDICTED: calsequestrin-2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90997 False 1909 lncRNA 0.41 6 31278087 31282858
TU90999 True 2204 lncRNA 0.42 10 31278087 31287434

Neighbor

gene id symbol gene type direction distance location
AMCG00014787 vangl1,LOC106574540 coding upstream 13832 31241301 ~ 31264255 (+)
AMCG00014783 NA coding upstream 233346 31041891 ~ 31044741 (+)
AMCG00014784 NA coding upstream 251085 31023543 ~ 31027002 (+)
AMCG00014781 NA coding upstream 360521 30907169 ~ 30917566 (+)
AMCG00014771 NA coding upstream 426945 30847172 ~ 30851142 (+)
AMCG00014788 poglut1 coding downstream 10316 31297750 ~ 31308262 (+)
AMCG00014792 NA coding downstream 25539 31312973 ~ 31330675 (+)
AMCG00014800 NA coding downstream 394097 31681531 ~ 31696173 (+)
AMCG00014801 NA coding downstream 419814 31707248 ~ 31709519 (+)
AMCG00014798 NA coding downstream 439852 31727286 ~ 31741350 (+)
G72789 NA non-coding upstream 274299 31003372 ~ 31003788 (+)
G72783 NA non-coding upstream 321803 30955905 ~ 30956284 (+)
G72769 NA non-coding upstream 431666 30846162 ~ 30846421 (+)
G72768 NA non-coding upstream 433417 30841560 ~ 30844670 (+)
G72767 NA non-coding upstream 440918 30836836 ~ 30837169 (+)
G72861 NA non-coding downstream 174712 31462146 ~ 31463811 (+)
G72875 LOC103376870 non-coding downstream 236881 31524315 ~ 31592105 (+)
G72911 NA non-coding downstream 414728 31702162 ~ 31702435 (+)
G72912 NA non-coding downstream 415712 31703146 ~ 31703573 (+)
G72926 NA non-coding downstream 458089 31745523 ~ 31746900 (+)
AMCG00014786 nhlh2,LOC106574539,LOC107739819,LOC105019883 other upstream 130210 31143423 ~ 31147877 (+)
G72787 NA other upstream 281724 30990063 ~ 30996363 (+)
G72786 NA other upstream 297835 30979570 ~ 30980252 (+)
G72785 fam160a2 other upstream 299262 30978216 ~ 30978825 (+)
AMCG00014777 NA other upstream 465800 30764351 ~ 30812287 (+)
AMCG00014793 NA other downstream 225374 31512808 ~ 31523187 (+)
G72925 NA other downstream 429684 31717118 ~ 31754930 (+)
AMCG00014799 NA other downstream 503467 31790901 ~ 31798463 (+)
AMCG00014811 NA other downstream 652119 31939553 ~ 31962971 (+)
G73103 NA other downstream 1255076 32542510 ~ 32561489 (+)

Expression


Co-expression Network