G73117


Basic Information

Item Value
gene id G73117
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 32569671 ~ 32574686 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU91363
GTAAAAGGTAGCCGGTACTGATGGACAGCATGTGTCGAGTAATATGTTACAATAATAAgtgcatttcagattaaaaaacaaactccttGCCGATTTCAGCCGTTTCTCTTCCGCTTCCTCCTGCTCCAGAATCCCTTCTCATGAGTGATGTCATTTCCGTTGTGagaattgttgtgtgtgttgtggaaattattttttgtgctctcaaaatatttttcttgttttttgcacttcagggccaccgaaATGAGTAGGTGCCGGCCTTCTTCTTCGAACAGTAGAGATCAGCCAAATGATAATGCCCCAGATGCCAGCACACCTCTTGCAGTCCTGTCAGCCTCACAGGAAATGCAGCCTCTTGAGGGAGGGAGTTCAGGAAGTGCAGGCCAGATCCAGGAATAGCCCCTTTGACCTTGTGGACAAGGTTACAGCAGCTGGCCTGAACTTCAGAGGATACTGTTGCTTACATTATCATTACATGAGTAATGATAGATTGTGTATGCAACCACAATTATCTGAAACAGAAAGCAAtgcccaaagggggatgggttAGCCAGTTCACATGGATAccttattgaaatatttttcatatttcatttttcatggaTAAGCAAGAACTTTAAACCTGGTCCATCCAGGCATTCGGCGATTCCAGTGCTGTGTCATGCACATGCCTGTGTGCACTGGGGCCTCTGTGACCCTTGGTGTGGGGGGCTGTTGGCAGGGAGGGCGCTGCTGGCTCAACAACAAGTGGAACTCAGGGCCATGGAGAGCCAAGAGTCACTGGCAGAGGGAACCGGAAGCGCAGCTGAAAGCGTGTGCAGAACATGCGTGACTAATAGAGGGCTGCTCTAATGCTGTCTCAGACCTGCCAactttgaaatatgaaaaataataaggcACACTTCAGAGATTAAGGAATGTCAGGAAATTTAACAatgaactaaaaataatataacctCACTATATActataactatttatttattacatgatAGAGGTACATTGTGCTTGATCAAAAAGTTTGTGAACAAGACTTCAGCCCTGATAGCTCCAAGATAATCACCTCGACTGATGACATTTTCAAGTTTCGAGCAGGTAGACACAGTAGCAGCCTTGTTCTCATACTTCTtggtacatacagtgagggaaaaaaagtatttgatcccctgctgattttgtacgtttgtccactgacaaagaaatgatcagtctataattgtaatggtaggtgtattttaacagtgagagacagaataacaagaaaaaaaatagaaaaatgcatttcaaaaaagttataaattgatttgcatgttaatgagggaaataagtatttgatcccctatcaatcagcaagatttctggctcccaggtgtcttttatacaggtaactgtataaaagacacctatccacagaagcaatcaatcaatcagattccaaactctccaccatgtccaaggatgtcagggacaagattgtagacctacacaaggctggaatgggctacaagaccatagccaagcagcttggtgagaaggtgacaacagctggtgtgattattcgcaaatggaaggaacacaaaataattgtcaGTCTCCCTTGGTCTTGGGGCTCCATGAAAGATCTCACCTcttggagtttcaatgatcatgagaacagtgaggaatcagcccagaactacacgggaggatcttgttaattatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaataCACTACGCTGTTAAGGACTGAAATCCTTCAGcacccgcaaggtccccctgctcaagaaagcacatgtacagacCCGTCTGAA

Function

GO:

id name namespace
GO:0006401 RNA catabolic process biological_process
GO:0006402 mRNA catabolic process biological_process
GO:0000956 nuclear-transcribed mRNA catabolic process biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU91363 True 1832 lncRNA 0.43 2 32569671 32574686

Neighbor

gene id symbol gene type direction distance location
AMCG00014814 NA coding downstream 246912 32321974 ~ 32322759 (-)
AMCG00014813 NA coding downstream 283735 32270685 ~ 32285936 (-)
AMCG00014809 NA coding downstream 600448 31967444 ~ 31969223 (-)
AMCG00014806 NA coding downstream 779934 31769573 ~ 31789737 (-)
AMCG00014797 NA coding downstream 862149 31700627 ~ 31707522 (-)
AMCG00014820 NA coding upstream 54146 32628832 ~ 32641932 (-)
AMCG00014819 NA coding upstream 72848 32647534 ~ 32648995 (-)
AMCG00014818 NA coding upstream 75490 32650176 ~ 32653420 (-)
AMCG00014823 slc10a2 coding upstream 217195 32791881 ~ 32793425 (-)
AMCG00014826 NA coding upstream 552992 33127678 ~ 33434382 (-)
G73112 NA non-coding downstream 45869 32523238 ~ 32523802 (-)
G73106 NA non-coding downstream 103255 32450422 ~ 32466416 (-)
G73082 NA non-coding downstream 138720 32430597 ~ 32430951 (-)
G73066 NA non-coding downstream 207278 32357702 ~ 32362393 (-)
G73049 NA non-coding downstream 304247 32265132 ~ 32265424 (-)
G73132 NA non-coding upstream 53843 32628529 ~ 32630521 (-)
G73181 NA non-coding upstream 133327 32708013 ~ 32708283 (-)
G73182 NA non-coding upstream 135158 32709844 ~ 32710115 (-)
G73183 NA non-coding upstream 136111 32710797 ~ 32711045 (-)
G73184 NA non-coding upstream 136561 32711247 ~ 32711703 (-)
AMCG00014816 NA other downstream 13726 32455306 ~ 32555945 (-)
G73047 NA other downstream 306244 32263167 ~ 32263427 (-)
AMCG00014775 NA other downstream 1722871 30841523 ~ 30846800 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other downstream 3171366 29389290 ~ 29398305 (-)
G72236 rpl8,LOC107595836,LOC107748161 other downstream 4237189 28329739 ~ 28332482 (-)
G73127 NA other upstream 22776 32597462 ~ 32619149 (-)
AMCG00014824 NA other upstream 220319 32795005 ~ 32806295 (-)
AMCG00014825 NA other upstream 495563 33070249 ~ 33119328 (-)
G73328 LOC101154678 other upstream 2194897 34769583 ~ 34769979 (-)
AMCG00014839 tmem50b,LOC101064157,LOC101067980 other upstream 3005940 35580626 ~ 35608677 (-)

Expression


Co-expression Network