G73888


Basic Information

Item Value
gene id G73888
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37706500 ~ 37708190 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU92268
ATAGTAACTGATTTATTCTACTGGGGAAAGACTGGTAGCTTTGAAGAGCAGAAACGAAAAAGACAGAAACTGCACTAAAACACAGGAAATTCACCAAATTTAACtgggaaacaaaaatatatttctctgtgAAGGAATTACAGTGCCCAATGAACTACAAAGTCCCATCAGTCACTGCAGTAGAGCATACATGCTCCCTTGCTGCTGGAGTGATTGGAGGCTGGAGCACTGCAACCCTCATAAAAATGGTCCCCTACTTTTCTTGGGGAGTGTGAACCAATAAGGGGAGAGCACAAAGGGCCTCCCACTGGATTTCTTTGGACTGCAGAGACAAAGGGTGCAGAGGACTCGGGCCAGATCAAATCTTGATGGGGATCTTCTCTGGACTGGATCGAGAGACTGGGAATTTATAGGAGCATCTAGTATAACTGCAGATACTAATGTAGCACACTGGGTCTTCCATTTCCACTGCACTGCATTGCTTCATTGGTCCTCGaaagctacagtacagtactacaGGGTCTCCAGCTCTGGTTCTGGAGAGACACAGTATAAGCCAGTACAGTAGGTTctccagtcctggtcctggagagacactgTAGAGTACGGCAGTAGTGTTGATACTACAGGACTGGACTCAGCGAGGGAGGGATTCAGTCTAAAACACAGTGCAATGGGGATATTTGAATTCTGTGCATTATAATGGGTCAAGGGCCCAGAGGTGGAAGTGTACAATGTTAAATGTTGGCCCCAGCAGGGGGATTTAACATTGGCCCACAGTTCTCCCTGAATAGGCAGGAAAGTCTGGTAACGTGGTGACCAGGAGCAGGGATCTACTACTAACTTCAGGTAAAAGTCAAGTACTACTGATAACTGATACCAAATACCAATACAGATACCAATACTGCAAACTGATATCAAAGTCTCATccttcatgttttttaatttgtttttgtattttgtgttggtTACGTAATATAATTATCGCTtgcacaacaggaaaacactgGAGCTATACTGTTATTTTTGGGACTTCCTTCTTCAAaaggggctgtgtgtgtgtgagaatgtgtgagtgtgtgactgtgtgtgtgttggagggtGATGCACTGTACACCAGTAATTGATAAGACAGTTTTCTGTGCTTGtacaaaaagaaataataataaaacaaaatggattgcGGGCTcagggatgaaaaaaaaatcattgatTTTAATCTCAGAAAGCCCaaattattgctttcaaatccTGATTGTTGTTactatttattacactgtttgGGGGAATACAGCCTCTTGTAAAAGCCAATGTCTAGAGAGGGTGAAGTGAAACTCTATACCGttgcacatttttattaatacatttgcctTCTTATGTCTGAGTAGGGGTGAAGGGGAAGGTTTTTTGttggggaagaaaaacacaccacCCATGACGGGACATTGGAGATTGTGTCGGGGGCGGGTATTTGGAACTCGAGAGTTATACTGTGGCGTTTTTCTAGCTCTGTGATTGGTGAAGGCTGACGATGCCTCCGCTCCGATTAGCTAGCAGCTTGAATGTGTGTGCGCTGAAGATCACAGGGGGAATGAAGTTAACCTCAGTAGGTCAGAAAGAACACCTGTCATTTAACTGGATAAATAAGCATATGCAACAGCATAGTGGCTTTCACATCACCCTGTATGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92268 True 1691 lncRNA 0.43 1 37706500 37708190

Neighbor

gene id symbol gene type direction distance location
AMCG00014862 NA coding upstream 148 37696660 ~ 37706352 (+)
AMCG00014853 cyh2,cyth4,LOC107558519,LOC107555099 coding upstream 676438 37000630 ~ 37030062 (+)
AMCG00014852 NA coding upstream 791997 36913400 ~ 36914503 (+)
AMCG00014850 NA coding upstream 973247 36617665 ~ 36733253 (+)
AMCG00014848 tmprss3,LOC107748899 coding upstream 1408777 36295716 ~ 36297723 (+)
AMCG00014864 NA coding downstream 45605 37753795 ~ 37754523 (+)
AMCG00014863 NA coding downstream 46669 37754859 ~ 37755848 (+)
AMCG00014870 NA coding downstream 193607 37901797 ~ 37904976 (+)
AMCG00014867 NA coding downstream 227401 37935591 ~ 37944752 (+)
AMCG00014869 NA coding downstream 246180 37954370 ~ 37956516 (+)
G73896 NA non-coding upstream 22958 37683315 ~ 37683542 (+)
G73895 NA non-coding upstream 24861 37681367 ~ 37681639 (+)
G73890 NA non-coding upstream 58620 37647603 ~ 37647880 (+)
G73872 NA non-coding upstream 104089 37598728 ~ 37602411 (+)
G73852 NA non-coding upstream 174287 37531616 ~ 37532213 (+)
G73889 NA non-coding downstream 96 37708286 ~ 37708801 (+)
G73914 NA non-coding downstream 37793 37745983 ~ 37746187 (+)
G73917 NA non-coding downstream 112896 37821086 ~ 37821362 (+)
G73939 NA non-coding downstream 168071 37876261 ~ 37884688 (+)
G73944 NA non-coding downstream 224332 37932522 ~ 37932795 (+)
G73850 NA other upstream 188094 37518108 ~ 37518406 (+)
AMCG00014836 NA other upstream 2293913 35390634 ~ 35412587 (+)
G73343 NA other upstream 2746053 34942011 ~ 34960447 (+)
G73329 NA other upstream 2925910 34780122 ~ 34780590 (+)
G73292 LOC100846954 other upstream 3467100 34238934 ~ 34239400 (+)
G74114 NA other downstream 724184 38432374 ~ 38432861 (+)
G74227 NA other downstream 1102503 38810693 ~ 38811128 (+)
G74348 NA other downstream 1628078 39336268 ~ 39475819 (+)
AMCG00014909 ankrd54 other downstream 1875848 39584038 ~ 39588507 (+)
AMCG00014913 NA other downstream 1898697 39606887 ~ 39621186 (+)

Expression


Co-expression Network