G74367 (LOC103154960,LOC103154959,LOC107580460,LOC107576269,LOC106912990)


Basic Information

Item Value
gene id G74367
gene name LOC103154960,LOC103154959,LOC107580460,LOC107576269,LOC106912990
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39293951 ~ 39299385 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU92839
CCCACAGTAAGAGCTGCCTGGCCAGGTGTGGGCAGGGGCAATTACCTGGCCGGTGTTCCTGGAGGAGATGACGCACACATCAGCAGGGTTCTCGATGGCCACGATGGCACGTGCAGCCAGCAGCAGCTTCTCCCAGGTCTTCTTCAGGTTGACGATGTAACACCATCACTCTTCCTCTTGTAGACGTACTGCTCCATCTGGAAGTCCAGGTTAGTCCCGCCCAGGTGGGTCCCGGCGGCCAGGAACTTCAACACATCCTCCTCCTTCATCTGCAGCACGTCCAGACCTCCGGACATCGTGAGAGCTTCCCTGGACAAGTTACGACGGGAAagctggagggagggagggagaatgaGTACACCTGAAGGAGATGCTGCTGTCCTCCATGACCCCAGGCGGTGTCTGTGGCTCGGGTCACTATCAAACCCCCGTCATCGGGCCGAGCCCTCATGGCGTTAGCGAAAACCCGGCACTTCACTCTCGCACACTTCCGACACCCGCAGACCGACCTCGGCCCCGGGCTTTAACAGTGTGCCCTAACTGCACAGCAGCGCAGCCGCCAGCTACAGCTCTCTTGGCGGACTCCTTATGCATGGAGATTTACCGAATATAAGGGATAgtacaattacagatcaaaataCAGTTACAGGTTGTCAATGACATGTGAATAGTTAAACAGGCAATATAAATGTGCTACATGCTAGATTGCAATAGCGCACGTCCTATACCCAGCTTATGCAGCCGGGCCTGGGCTGAGCTCTGATCCGGCATCCAGCATCCTGACCAGCTCTCAATGCATTTAAACGAGCCTGCAAATCCACATCAGCGCACCGGCAGCAATACAGCACTTTCACTCACGATCTGTTACTGTAAAGTATAGGGTAACAATTTATTGTCGAATCGGTCGATATTGCGTCTATTTTAGGTTTTTCAGCTTGATTTGACGGCCTAAGACGGGACGATGTCAGATGCATCCATTTCTGCCGGGGCCGCGTGGGGTGACGGGCTCCCTGCGTGACCGGACACGTTTCCAGGAAGCCGGCAACCGCAGTTCAGCGCACAAGCTCCCGCACACACTACGTGAACGCACATCCACACTGCCCGGAGAGACGGCACTTTGCCGCCGCCATGGCCTGCCACGCCAGCCCCAGGCTTTAGGCCTCACACGCGTCCCTCCCGTAAAACAGCATCTAAATCCGTAATATCGCCGCCTCGGCGACCTAAGACGCCATCGTGCGGCTCCAGCGAGCCCCAGCGGCGGGCGGCCGAGCCCGGGTCGGCGCGGTGGGTCAATTTCACACAAATACGGGACTCACCACGAGACAACGCCGTATGGAGATCCTCAGCACACGGAAATAAAGAGGCCGAGCGGAGGAAGTGACGCCTATTTATCGGCCTGCTTCCACCAATCAGCGCTCACTTCCTGTCCGCCAGGCGCAGGGATTCGGTAAC
>TU92843
CTGAACCTGAAATGTCAGATAATTACTGTTGATGTTAGCTAgtttttgttcttgtgtgtgtgtttttttctttttcaggttagattatcacacacacactgacatatatttaatgttgagagaatgttaaattgtccccAGGGTTCGCATTACGGGGGGGATTGGGGGGTTTAACCCCCCTAATAAAGACTTGGGCACCCCCGAAACAGAGGTAAAAACAataggtgggggtgggggtcaaaacatttatataacgTAAGCACTAGCATGATGGAAACACGACCTACACCCGCACCCCCCACTACCACCGTGGACAAAACACCGTCTGCAACACCCCCCGCGCACCTCGTGGCACCGCAGACAACATTGCTGAGCCCCCCAATTGCCATTGTATATTTTGCACTGTGATTGTCCCCCCAAACAATGGTTGGCTGGCTCATGATTGTATTACAGTGgaaaagtattcaccctccttggacttttccacatttaattgtgttacaacataaaATCAGCATGTAGAACCTAGGGCTGCCATCAGGCTTTGTCAGCAGTTTTTCCCAGATTAACTCCACATGAGATTAATGAAGAGCCACTAAATGAATCCCATCTACAACAGCATGTGTCAGACACTATAAATAATGGATCAGGTAGTGCTGTATTAAATCACTAATTTTTCAAGGTAGTTTCTTATTTCTGCAGTGGGTTGAAGACTTAAATTAAGATGCCAGTTATTTCTCAAATCAGTTGAAAAGGCAAATGGCAATCACGGTGGGCACAAACCACATGGCTTGGGTTTATGCCATTATCCAGAAAACTTAAATAGAATGAACATATTACATAATTAGAATTAAccaatttaaagtgtttaatttctgcatatttatacaaaaaagtTTAAGTTTTAAAGTGACTAAATCTTTTCCAGTTCAATTGCTCTCAAGACAAATAATGGAACATTCCTTCAAATATTCAGGTTATCCTGTCCATGACATAACCCTGGGTTTAACGGCTGGACAACAGTGCTAGTGTTGAATAAAGTGTAATAAAAGTGAACTGGTTTAGAGAGGCCATGACATCAGTGGCCAGGCTCGTTACATCAGGCATCGGTCACCAGTCCCCCACCCTCCAACAAAACAGCAGCCAGACTTGTGCTTTTGTAACAAACAGctggtttatttttcactgcTCAGAGTTCCTGCTGCTTCCCTCAGGACCAGTCAGCCGTGGCGCCGCCCCAGTCAGAGGCCTGGGCCGTGGGCGCGGCAGACCAATCCTCGGTGGCGGGCTGGGCGCTCCAGTCCTCTATGTTCCACTTTCTCCCCATCTCGCTCACCTGCGAACGCTTCAGTGGTTCCAGGTTCGCGTTTGACAGGAGGACCTGGACAGAAACGGGGATGAGAAGGAATGACTTAACAGACGGGCAGCGCTGAAAGCAGCTTCTGCCCTGGTCAGGGTCCTGTACCTACGCAGCCCAACTGCGCAGTTGTGTGCGGCAGGGCTCACTGTGCTCTCCATCGTGCGGTTGCGTACTCTGCACTGGTGTTGGTCTATCGGTCAGGGCTGGTGTGGATGGGATCAGCACTGATCTGAGTTACTGGGGTCAGTAGGACTGCTCTGTGGGGTATCAGGGCAGTCAGCAGCAGTGCTGGGGTGCGTACCTGCGGGGAACTGCTGAATTGGCACAGAGGGCACCTGGACGCCCTCAGACCAGTCGGCCACCTCAGGCTGCGTGAAGTCGGCCACCGGTGCGGTCCACTCGCCCTGGAACTCCTCCTTCCCCACGGCCTTCTCTGCCGCGGCCTGCTCCTCCTTCTCAATCTGCAGGGACAGACAGGGTcagcgtgtgtgcgtgcgtgtgtgggtgggtgagggtcagcgtgtgtgcgtgtgggtgaAGGTCAGCGAAACTCACCTCCTCTGGGTCCCTgtagaagtacagatcaggcaTGACCTCCCAGGGGTGCTCCCGAGAGATGGTCCCCCTCATGCGCAGCACCTCACGGGCCAGCATCCACCACATGAGCCCCACAGAGTGAGGGCCCTGCAAGAGCAGCGCATTAACACCGATACAGCAACAACTCCACAGCATTCACACGCTACGGACGGCATTAAAGTCCCACTGTCAACAACTG
>TU92844
CTGAACCTGAAATGTCAGATAATTACTGTTGATGTTAGCTAgtttttgttcttgtgtgtgtgtttttttctttttcaggttagattatcacacacacactgacatatatttaatgttgagagaatgttaaattgtccccAGGGTTCGCATTACGGGGGGGATTGGGGGGTTTAACCCCCCTAATAAAGACTTGGGCACCCCCGAAACAGAGGTAAAAACAataggtgggggtgggggtcaaaacatttatataacgTAAGCACTAGCATGATGGAAACACGACCTACACCCGCACCCCCCACTACCACCGTGGACAAAACACCGTCTGCAACACCCCCCGCGCACCTCGTGGCACCGCAGACAACATTGCTGAGCCCCCCAATTGCCATTGTATATTTTGCACTGTGATTGTCCCCCCAAACAATGGTTGGCTGGCTCATGATTGTATTACAGTGgaaaagtattcaccctccttggacttttccacatttaattgtgttacaacataaaATCAGCATGTAGAACCTAGGGCTGCCATCAGGCTTTGTCAGCAGTTTTTCCCAGATTAACTCCACATGAGATTAATGAAGAGCCACTAAATGAATCCCATCTACAACAGCATGTGTCAGACACTATAAATAATGGATCAGGTAGTGCTGTATTAAATCACTAATTTTTCAAGGTAGTTTCTTATTTCTGCAGTGGGTTGAAGACTTAAATTAAGATGCCAGTTATTTCTCAAATCAGTTGAAAAGGCAAATGGCAATCACGGTGGGCACAAACCACATGGCTTGGGTTTATGCCATTATCCAGAAAACTTAAATAGAATGAACATATTACATAATTAGAATTAAccaatttaaagtgtttaatttctgcatatttatacaaaaaagtTTAAGTTTTAAAGTGACTAAATCTTTTCCAGTTCAATTGCTCTCAAGACAAATAATGGAACATTCCTTCAAATATTCAGGTTATCCTGTCCATGACATAACCCTGGGTTTAACGGCTGGACAACAGTGCTAGTGTTGAATAAAGTGTAATAAAAGTGAACTGGTTTAGAGAGGCCATGACATCAGTGGCCAGGCTCGTTACATCAGGCATCGGTCACCAGTCCCCCACCCTCCAACAAAACAGCAGCCAGACTTGTGCTTTTGTAACAAACAGctggtttatttttcactgcTCAGAGTTCCTGCTGCTTCCCTCAGGACCAGTCAGCCGTGGCGCCGCCCCAGTCAGAGGCCTGGGCCGTGGGCGCGGCAGACCAATCCTCGGTGGCGGGCTGGGCGCTCCAGTCCTCTATGTTCCACTTTCTCCCCATCTCGCTCACCTGCGAACGCTTCAGTGGTTCCAGGTTCGCGTTTGACAGGAGACCTGCGGGGAACTGCTGAATTGGCACAGAGGGCACCTGGACGCCCTCAGACCAGTCGGCCACCTCAGGCTGCGTGAAGTCGGCCACCGGTGCGGTCCACTCGCCCTGGAACTCCTCCTTCCCCACGGCCTTCTCTGCCGCGGCCTGCTCCTCCTTCTCAATCTGCAGGGACAGACAGGGTcagcgtgtgtgcgtgcgtgtgtgggtgggtgagggtcagcgtgtgtgcgtgtgggtgaAGGTCAGCGAAACTCACCTCCTCTGGGTCCCTgtagaagtacagatcaggcaTGACCTCCCAGGGGTGCTCCCGAGAGATGGTCCCCCTCATGCGCAGCACCTCACGGGCCAGCATCCACCACATGAGCCCCACAGAGTGAGGGCCTTGTTGTTGCAGGGGATGGCGATGTCCACGTATCTCAGAGGCGAGTCAGTGTTGCACAGCGCGATGGTGGGGATGTTGACGTACGAGGCCTCAGTCAACGGCTGGTGGTCGGCCCGCGGGTCGGTGACGATCAGGAGGCGGGGCTCCCGGAAGGCAGCCTGGATCTGATTGGTGAAGGTGCCGGGTGTGAATCGGCCGGCAAAGGTGGTGGCACCGGTGGCCGAGGCAAACTTCAGCACCGCCCCTGGCCGGTGTTCCTGGAGGAGATGACGCACACATCAGCAGGGTTCTCGATGGCCACGATGGCACGTGCAGCCAGCAGCAGCTTCTCCCAGGTCTTCTTCAGGTTGACGATGTAAACCATCACTCTTCCTCTTGTAGACGTACTGCTCCATCTGGAAGTCCAGGTTAGTCCCGCCCAGGTGGGTCCCGGCGGCCAGGAACTTCAACACATCCTCCTCCTTCATCTGCAGCACGTCCAGACCTCCGGACATCGTGAGAGCTTCCCTGGACAAGTTACGACGGGAAaACGAGACAACGCCGTATGGAGATCCTCAGCACACGGAAATAAAGAGGCCGAGCGGAGGAAGTGACGCCTATTTATCGGCCTGCTTCCACCAATCAGCGCTCACTTCCTGTCCGCCAGGCGCAGGGATTCGGTAAC
>TU92845
CTGAACCTGAAATGTCAGATAATTACTGTTGATGTTAGCTAgtttttgttcttgtgtgtgtgtttttttctttttcaggttagattatcacacacacactgacatatatttaatgttgagagaatgttaaattgtccccAGGGTTCGCATTACGGGGGGGATTGGGGGGTTTAACCCCCCTAATAAAGACTTGGGCACCCCCGAAACAGAGGTAAAAACAataggtgggggtgggggtcaaaacatttatataacgTAAGCACTAGCATGATGGAAACACGACCTACACCCGCACCCCCCACTACCACCGTGGACAAAACACCGTCTGCAACACCCCCCGCGCACCTCGTGGCACCGCAGACAACATTGCTGAGCCCCCCAATTGCCATTGTATATTTTGCACTGTGATTGTCCCCCCAAACAATGGTTGGCTGGCTCATGATTGTATTACAGTGgaaaagtattcaccctccttggacttttccacatttaattgtgttacaacataaaATCAGCATGTAGAACCTAGGGCTGCCATCAGGCTTTGTCAGCAGTTTTTCCCAGATTAACTCCACATGAGATTAATGAAGAGCCACTAAATGAATCCCATCTACAACAGCATGTGTCAGACACTATAAATAATGGATCAGGTAGTGCTGTATTAAATCACTAATTTTTCAAGGTAGTTTCTTATTTCTGCAGTGGGTTGAAGACTTAAATTAAGATGCCAGTTATTTCTCAAATCAGTTGAAAAGGCAAATGGCAATCACGGTGGGCACAAACCACATGGCTTGGGTTTATGCCATTATCCAGAAAACTTAAATAGAATGAACATATTACATAATTAGAATTAAccaatttaaagtgtttaatttctgcatatttatacaaaaaagtTTAAGTTTTAAAGTGACTAAATCTTTTCCAGTTCAATTGCTCTCAAGACAAATAATGGAACATTCCTTCAAATATTCAGGTTATCCTGTCCATGACATAACCCTGGGTTTAACGGCTGGACAACAGTGCTAGTGTTGAATAAAGTGTAATAAAAGTGAACTGGTTTAGAGAGGCCATGACATCAGTGGCCAGGCTCGTTACATCAGGCATCGGTCACCAGTCCCCCACCCTCCAACAAAACAGCAGCCAGACTTGTGCTTTTGTAACAAACAGctggtttatttttcactgcTCAGAGTTCCTGCTGCTTCCCTCAGGACCAGTCAGCCGTGGCGCCGCCCCAGTCAGAGGCCTGGGCCGTGGGCGCGGCAGACCAATCCTCGGTGGCGGGCTGGGCGCTCCAGTCCTATGTTCCACTTTCTCCCCATCTCGCTCACCTGCGAACGCTTCAGTGGTTCCAGGTTCGCGTTTGACAGGAGGACCTGGACAGAAACGGGGATGAGAAGGAATGACTTAACAGACGGGCAGCGCTGAAAGCAGCTTCTGCCCTGGTCAGGGTCCTGTACCTACGCAGCCCAACTGCGCAGTTGTGTGCGGCAGGGCTCACTGTGCTCTCCATCGTGCGGTTGCGTACTCTGCACTGGTGTTGGTCTATCGGTCAGGGCTGGTGTGGATGGGATCAGCACTGATCTGAGTTACTGGGGTCAGTAGGACTGCTCTGTGGGGTATCAGGGCAGTCAGCAGCAGTGCTGGGGTGCGTACCTGCGGGGAACTGCTGAATTGGCACAGAGGGCACCTGGACGCCCTCAGACCAGTCGGCCACCTCAGGCTGCGTGAAGTCGGCCACCGGTGCGGTCCACTCGCCCTGGAACTCCTCCTTCCCCACGGCCTTCTCTGCCGCGGCCTGCTCCTCCTTCTCAATCTGCAGGGACAGACAGGGTcagcgtgtgtgcgtgcgtgtgtgggtgggtgagggtcagcgtgtgtgcgtgtgggtgaAGGTCAGCGAAACTCACCTCCTCTGGGTCCCTgtagaagtacagatcaggcaTGACCTCCCAGGGGTGCTCCCGAGAGATGGTCCCCCTCATGCGCAGCACCTCACGGGCCAGCATCCACCACATGAGCCCCACAGAGTGAGGGCCCTGTTGTTGCAGGGGATGGCGATGTCCACGTATCTCAGAGGCGAGTCAGTGTTGCACAGCGCGATGGTGGGGATGTTGACGTACGAGGCCTCAGTCAACGGCTGGTGGTCGGCCCGCGGGTCGGTGACGATCAGGAGGCGGGGCTCCCGGAAGGCAGCCTGGATCTGATTGGTGAAGGTGCCGGGTGTGAATCGGCCGGCAAAGGTGGTGGCACCGGTGGCCGGTGTTCCTGGAGGAGATGACGCACACATCAGCAGGGTTCTCGATGGCCACGATGGCACGTGCAGCCAGCAGCAGCTTCTCCCAGGTCTTCTTCAGGTTGACGATGTAACACCATCACTCTTCCTCTTGTAGACGTACTGCTCCATCTGGAAGTCCAGGTTAGTCCCGCCCAGGTGGGTCCCGGCGGCCAGGAACTTCAACACATCCTCCTCCTTCATCTGCAGCACGTCCAGACCTCCGGACATCGTGAGAGCTTCCCTGGACAAGTTACGACGGGAAagctggagggagggagggagaatgaGTACACCTGAAGGAGATGCTGCTGTCCTCCATGACCCCAGGCGGTGTCTGTGGCTCGGGTCACTATCAAACCCCCGTCATCGGGCCGAGCCCTCATGGCGTTAGCGAAAACCCGGCACTTCACTCTCGCACACTTCCGACACCCGCAGACCGACCTCGGCCCCGGGCTTTAACAGTGTGCCCTAACTGCACAGCAGCGCAGCCGCCAGCTACAGCTCTCTTGGCGGACTCCTTATGCATGGAGATTTACCGAATATAAGGGATAgtacaattacagatcaaaataCAGTTACAGGTTGTCAATGACATGTGAATAGTTAAACAGGCAATATAAATGTGCTACATGCTAGATTGCAATAGCGCACGTCCTATACCCAGCTTATGCAGCCGGGCCTGGGCTGAGCTCTGATCCGGCATCCAGCATCCTGACCAGCTCTCAATGCATTTAAACGAGCCTGCAAATCCACATCAGCGCACCGGCAGCAATACAGCACTTTCACTCACGATCTGTTACTGTAAAGTATAGGGTAACAATTTATTGTCGAATCGGTCGATATTGCGTCTATTTTAGGTTTTTCAGCTTGATTTGACGGCCTAAGACGGGACGATGTCAGATGCATCCATTTCTGCCGGGGCCGCGTGGGGTGACGGGCTCCCTGCGTGACCGGACACGTTTCCAGGAAGCCGGCAACCGCAGTTCAGCGCACAAGCTCCCGCACACACTACGTGAACGCACATCCACACTGCCCGGAGAGACGGCACTTTGCCGCCGCCATGGCCTGCCACGCCAGCCCCAGGCTTTAGGCCTCACACGCGTCCCTCCCGTAAAACAGCATCTAAATCCGTAATATCGCCGCCTCGGCGACCTAAGACGCCATCGTGCGGCTCCAGCGAGCCCCAGCGGCGGGCGGCCGAGCCCGGGTCGGCGCGGTGGGTCAATTTCACACAAATACGGGACTCACCACGAGACAACGCCGTATGGAGATCCTCAGCACACGGAAATAAAGAGGCCGAGCGGAGGAAGTGACGCCTATTTATCGGCCTGCTTCCACCAATCAGCGCTCACTTCCTGTCCGCCAGGCGCAGGGATTCGGTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92839 False 1452 lncRNA 0.57 2 39293951 39295579
TU92843 False 2135 lncRNA 0.50 2 39296992 39299385
TU92844 False 2427 lncRNA 0.52 7 39293951 39299385
TU92845 True 3665 lncRNA 0.53 5 39293951 39299385

Neighbor

gene id symbol gene type direction distance location
AMCG00014905 NA coding downstream 8604 39282154 ~ 39285347 (-)
AMCG00014903 NA coding downstream 23707 39263141 ~ 39270244 (-)
AMCG00014901 NA coding downstream 76853 39205047 ~ 39217098 (-)
AMCG00014902 NA coding downstream 117290 39138823 ~ 39176661 (-)
AMCG00014897 NA coding downstream 457599 38728989 ~ 38836352 (-)
AMCG00014910 NA coding upstream 231941 39531326 ~ 39536843 (-)
AMCG00014915 NA coding upstream 293229 39592614 ~ 39599496 (-)
AMCG00014917 NA coding upstream 341026 39640411 ~ 39641256 (-)
AMCG00014916 NA coding upstream 349419 39648804 ~ 39657562 (-)
AMCG00014920 si:ch211-241c24.3,si:ch211-241c24.4,LOC107745955,LOC107553807 coding upstream 463185 39762570 ~ 39764640 (-)
G74368 NA non-coding downstream 55187 39232304 ~ 39238764 (-)
G74307 NA non-coding downstream 111317 39182366 ~ 39182634 (-)
G74277 NA non-coding downstream 251903 39002622 ~ 39042048 (-)
G74239 NA non-coding downstream 426025 38867561 ~ 38867926 (-)
G74232 NA non-coding downstream 456812 38836895 ~ 38837139 (-)
G74384 NA non-coding upstream 2539 39301924 ~ 39302208 (-)
G74385 NA non-coding upstream 3636 39303021 ~ 39303224 (-)
G74386 NA non-coding upstream 6323 39305708 ~ 39305970 (-)
G74387 NA non-coding upstream 15181 39314566 ~ 39315128 (-)
G74395 NA non-coding upstream 38945 39338330 ~ 39401229 (-)
G74375 myh9,LOC100380669 other downstream 33591 39258062 ~ 39260360 (-)
G74247 LOC100136012,LOC107575789 other downstream 373598 38898095 ~ 38920353 (-)
G74160 NA other downstream 649413 38597368 ~ 38644538 (-)
AMCG00014891 NA other downstream 800997 38488619 ~ 38492954 (-)
G74115 NA other downstream 861076 38432263 ~ 38432875 (-)
AMCG00014906 NA other upstream 78790 39378175 ~ 39379153 (-)
AMCG00014914 ankrd54,LOC107563363,LOC107728844,LOC107559232,LOC107670919,LOC107719341 other upstream 291111 39590496 ~ 39591658 (-)
G74477 NA other upstream 338514 39637899 ~ 39638957 (-)
G74569 NA other upstream 602085 39901470 ~ 39983396 (-)
G74593 NA other upstream 635508 39934893 ~ 40012081 (-)

Expression


Co-expression Network