G74469


Basic Information

Item Value
gene id G74469
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39623354 ~ 39624793 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU92961
TCGGGGCAGCGCTGTCACATCAGTACCTGGGCCTGTTTTAGCTTGTTCTCCAGGTCGTCCAGGTCCAGGTGCCGGTACCGGTACTTCTGGGCCTTGCAGAGGCGGATCCCATCAATGATTGACGCGTGGTTCAGCTCGTCTGATAGGACGGCATCCTCTGGGGTCAGCAAGACCTGACAGGAGCAGagcctgtgtgtcagtgtgtcagtcagtcagtcggtcagttAATAAGTGTCAGTCGGTTGGTCAGTCCCTCTGCACCTCGAACAGTCCTGCGTTGGCGTCAAAGCAGCTGGCGTACAGGATGGCGTCCTCCCGCTCATGGAACTGAGCGATCTTCTTCTCCAGAGCCTTGTGCAGGCCTGTGTCCCGCAGATGAAGCGCACTGAGCTCAGCCCGGCCCCGTACTGCTGCAGCGCCGCCACGCCGGCCTCGATCACCGCCGGGTGGCTGGACAGACCCAGGTAGTTATTGGCACAGAAATTCAGGATGTCTGAGGGAATTAGGGAGAGATGGACAGGGAGGggttaatacacacacagctactGCACactgcccagaga

Function

GO:

id name namespace
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU92961 True 563 lncRNA 0.59 2 39623354 39624793

Neighbor

gene id symbol gene type direction distance location
AMCG00014915 NA coding downstream 23858 39592614 ~ 39599496 (-)
AMCG00014910 NA coding downstream 86511 39531326 ~ 39536843 (-)
AMCG00014905 NA coding downstream 338007 39282154 ~ 39285347 (-)
AMCG00014903 NA coding downstream 353110 39263141 ~ 39270244 (-)
AMCG00014901 NA coding downstream 406256 39205047 ~ 39217098 (-)
AMCG00014917 NA coding upstream 15618 39640411 ~ 39641256 (-)
AMCG00014916 NA coding upstream 24011 39648804 ~ 39657562 (-)
AMCG00014920 si:ch211-241c24.3,si:ch211-241c24.4,LOC107745955,LOC107553807 coding upstream 137777 39762570 ~ 39764640 (-)
AMCG00014924 NA coding upstream 195770 39820563 ~ 39822089 (-)
AMCG00014927 NA coding upstream 334032 39958825 ~ 39960996 (-)
G74446 NA non-coding downstream 51948 39570678 ~ 39571406 (-)
G74427 NA non-coding downstream 123677 39498703 ~ 39499677 (-)
G74414 NA non-coding downstream 146250 39463079 ~ 39477104 (-)
G74413 NA non-coding downstream 169391 39453653 ~ 39453963 (-)
G74395 NA non-coding downstream 222125 39338330 ~ 39401229 (-)
G74501 NA non-coding upstream 74770 39699563 ~ 39702594 (-)
G74510 NA non-coding upstream 111251 39736044 ~ 39736401 (-)
G74512 NA non-coding upstream 119335 39744128 ~ 39744359 (-)
G74515 NA non-coding upstream 128902 39753695 ~ 39753938 (-)
G74597 NA non-coding upstream 338137 39962930 ~ 40005067 (-)
AMCG00014914 ankrd54,LOC107563363,LOC107728844,LOC107559232,LOC107670919,LOC107719341 other downstream 31696 39590496 ~ 39591658 (-)
AMCG00014906 NA other downstream 244201 39378175 ~ 39379153 (-)
G74375 myh9,LOC100380669 other downstream 362994 39258062 ~ 39260360 (-)
G74247 LOC100136012,LOC107575789 other downstream 703001 38898095 ~ 38920353 (-)
G74160 NA other downstream 978816 38597368 ~ 38644538 (-)
G74477 NA other upstream 13106 39637899 ~ 39638957 (-)
G74569 NA other upstream 276677 39901470 ~ 39983396 (-)
G74593 NA other upstream 310100 39934893 ~ 40012081 (-)
G74591 NA other upstream 319937 39944730 ~ 39951070 (-)
AMCG00014938 NA other upstream 610265 40235058 ~ 40268485 (-)

Expression


Co-expression Network