G74597


Basic Information

Item Value
gene id G74597
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39962930 ~ 40005067 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU93158
AATTcactttgcttttttgttttctctctctctctctgtgtctcagtgcacCATTAGTTGAGTGTGTGTAttaacctctccctctctcctctcagccCTGCCCTCCGGTCATTGAGAGTTTCTTCCAGGACAAGGCACCCCTGGTGATGGGCTGGTTCCTTGGCATCGCTGCACTcatggtGTGTGCTGTGGTGTGCAGTTCAGTCCTGGCCTCTGCAATCAAGAAAGGTCGAGACTCCCCACCCTCCTACTCCAATTATGTCTACTGAGCCCCCTCTTTTCTGCCACCCCCGTCCTAAACACCAGCACATACTACATTTGTTCCACCTTGTCTACTCTGTGCGcatgcctctctctcttcctctattTTATGGAGCACCTATGGGAGCCCCTGACCATGAGTCAGCTGTGCCAGAGTTCAGCTCCAATCTGCAGCACAGTACAGTTGCAGAGTTCCTGgatcccccccccaaaaaaatctagggatcaattaaccaatcaatgGACCAATTTAACCAATTAAAGGGGCAGAACTGCAGTTTGATTCCCTGCACAGAAACCCCAACAGCCTCCCTGAGATATTGGAGATCATGGGTTCCACAATCCTGGCACAGTATTTGTTCTGCCCTGATGCCCGGCTCCAGCGTGGTTTCCCTAGCGCTGTCTCTCTCGCACCACGTGCCTCTGTTCTGTGGGTCACTGTTTCAGAGAATATACTAGTTGCTTAATtacaaatttatatatatatataacaaatatagcTATAAATcttgttctgttcttttctaAGCAGTTACAGTGTGAAGATGTTTGACTTGTTTGAAGCTCTGCATTTGTCCAGCTTTGTGacctgaatgtttttttctatctgAGGGCGATGATGTGATTGTCATCGTCCcaccaaaaatacaataaaaaggatAGTGACTGGAaaaaaaaaaaaaaaaaaaaaaaag
>TU93159
AATTcactttgcttttttgttttctctctctctctctgtgtctcagtgcacCATTAGTTGAGTGTGTGTAttaacctctccctctctcctctcagccCTGCCCTCCGGTCATTGAGAGTTTCTTCCAGGACAAGGCACCCCTGGTGATGGGCTGGTTCCTTGGCATCGCTGCACTcatggtGTGTGCTGTGGTGTGCAGTTCAGTCCTGGCCTCTGCAATCAAGAAAGGTCGAGACTCCCCACCCTCCTACTCCAATTATGTCTACTGAGCCCCCTCTTTTCTGCCACCCCCGTCCTAAACACCAGCACATACTACATTTGTTCCACCTTGTCTACTCTGTGCGcatgcctctctctcttcctctattTTATGGAGCACCTATGGGAGCCCCTGACCATGAGTCAGCTGTGCCAGAGTTCAGCTCCAATCTGCAGCACAGTACAGTTGCAGAGTTCCTGgatcccccccccaaaaaaatctagggatcaattaaccaatcaatgGACCAATTTAACCAATTAAAGGGGCAGAACTGCAGTTTGATTCCCTGCACAGAAACCCCAACAGCCTCCCTGAGATATTGGAGATCATGGGTTCCACAATCCTGGCACAGTATTTGTTCTGCCCTGATGCCCGGCTCCAGCGTGGTTTCCCTAGCGCTGTCTCTCTCGCACCACGTGCCTCTGTTCTGTGGGTCACTGTTTCAGAGAATATACTAGTTGCTTAATtacaaatttatatatatatataacaaatatagcTATAAATcttgttctgttcttttctaAGCAGTTACAGTGTGAAGATGTTTGACTTGTTTGAAGCTCTGCATTTGTCCAGCTTTGTGacctgaatgtttttttctatctgAGGGCGATGATGTGATTGTCATCgaaaaaaaaaa

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU93158 True 956 lncRNA 0.46 3 39987502 40005067
TU93159 False 905 lncRNA 0.47 3 39962930 40005067

Neighbor

gene id symbol gene type direction distance location
AMCG00014927 NA coding downstream 1934 39958825 ~ 39960996 (-)
AMCG00014924 NA coding downstream 140841 39820563 ~ 39822089 (-)
AMCG00014920 si:ch211-241c24.3,si:ch211-241c24.4,LOC107745955,LOC107553807 coding downstream 198290 39762570 ~ 39764640 (-)
AMCG00014916 NA coding downstream 305368 39648804 ~ 39657562 (-)
AMCG00014917 NA coding downstream 321674 39640411 ~ 39641256 (-)
AMCG00014930 NA coding upstream 24705 40029772 ~ 40039325 (-)
AMCG00014935 NA coding upstream 80709 40085776 ~ 40107665 (-)
AMCG00014933 NA coding upstream 148352 40153419 ~ 40160349 (-)
AMCG00014934 NA coding upstream 157319 40162386 ~ 40164580 (-)
AMCG00014945 LOC107382204 coding upstream 303820 40308887 ~ 40315938 (-)
G74515 NA non-coding downstream 208992 39753695 ~ 39753938 (-)
G74512 NA non-coding downstream 218571 39744128 ~ 39744359 (-)
G74510 NA non-coding downstream 226529 39736044 ~ 39736401 (-)
G74501 NA non-coding downstream 260336 39699563 ~ 39702594 (-)
G74469 NA non-coding downstream 338137 39623354 ~ 39624793 (-)
G74611 NA non-coding upstream 37940 40043007 ~ 40043290 (-)
G74625 NA non-coding upstream 96826 40101893 ~ 40139101 (-)
G74633 NA non-coding upstream 123854 40128921 ~ 40129366 (-)
G74725 NA non-coding upstream 291794 40296861 ~ 40299179 (-)
G74736 NA non-coding upstream 332997 40338064 ~ 40360225 (-)
G74591 NA other downstream 11860 39944730 ~ 39951070 (-)
G74477 NA other downstream 323973 39637899 ~ 39638957 (-)
AMCG00014914 ankrd54,LOC107563363,LOC107728844,LOC107559232,LOC107670919,LOC107719341 other downstream 371272 39590496 ~ 39591658 (-)
AMCG00014906 NA other downstream 583777 39378175 ~ 39379153 (-)
G74375 myh9,LOC100380669 other downstream 702570 39258062 ~ 39260360 (-)
AMCG00014938 NA other upstream 229991 40235058 ~ 40268485 (-)
AMCG00014946 NA other upstream 276127 40281194 ~ 40294526 (-)
G74726 NA other upstream 298164 40303231 ~ 40304085 (-)
AMCG00014951 poldip3 other upstream 396716 40401783 ~ 40410777 (-)
AMCG00014949 ndua6,ndufa6 other upstream 432192 40437259 ~ 40534709 (-)

Expression


Co-expression Network