G74909


Basic Information

Item Value
gene id G74909
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41042064 ~ 41043557 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU93539
AAAACATGTAAGGGACtaggacagggagggagggagggaaggattgggagagaaggagagctGTCCAGTACACAGTGTAGAGTCCTGCAGGGGCTGTACTGTAGTCTCTTCAGCACAGTGAAGGAGCAGAGGGCACAGAGGGACAGCTTGTGTGTGAAGCTGGGGAACAGAGGGACAAtgtgtgtgaagcagggggacagagggacagtgtgtgtatgaagctgggggacagagggacagtgtgtgtatgAAGCTGGGGGACAGGGAGACTGAATTAATCTGGGTTGGAGGTTGCAGTGAATATAACTGGGGCAGctgcactgaacacactgatCTTACCACATCAATAGCAGCAGCGTCGCTTCCCTCAGTCGCCTCTAGAGGGCAGTGTTTACCTCAAACCCAAGGCCACACTTACAGGACGACTGCACTTCAATTGTTTAACAGACAAActtgtatctttttttctttttttttcactttaatgCCAGAATTCCTGCTGCTTGGTCACATTCTACCACCAGCATCtggtttcaattatttatttgtatgcagttagaattaaaatacagaactgtGACTTTCTAATTAACAGCAATGAAGTGGATCAATTAAATGTCCCTCCAGGCCCAAAAATAAGCCGTGAGGTTTCTGTATCTTTTAACTGGTTGCTAATGTGTTTGCAATCTGTGGCTCTTGGGGTTTCACTGCCTGACGCGTGTTTATACCCTCATCAGTGTGACTGGAATCACTTTAAAAATGTCAGCTGGTATTGGTGCTGCAGGGGGTCTCCTGtaggctgctgtctgtcagtctctgtCAGTTTTTCTGTCCACCTCTCAGTATACccgtccctctgtctgtctgtgtgacttCACTCACAGGTGAGAAAAACCTTTGTCAAAATCTTAACCTGACTGGACCGGACCGAGATGAGTGTGTCAGAGTTACTCAGAATCGATTTtctcttttgtattatttcccccatcataacattttaaatgagtaaaacacattttcctgcAGCTGATCTGACAGCTACAAGTGCACAGGTCTGCTTATTTGTGTTTCACAGggttttaaatctgtattacaGGAGCAGTATTGTAGTTGTGGGGCTTGTGTGTGCCATTGCTTTGTCTGTCCACAAGAGATCGCTGGGAGCCACTCGGCATCACAAGTCATTGATATCTTCAAAGGGGTGCTGggctttattttaagtgttccTGTTCTCACTGATACACAAAcagttcttttttaaatttattttttaaaggggaCAGTAAAGGAAGGTAATAACAGGATTGTTTTGTAACCTCGactgttatttaaatacaaaactatatacAATGTACTTTGTGggattgtattgttttacttgaatttaaagcagaaagaaacaaat
>TU93540
AAAACATGTAAGGGACtaggacagggagggagggagggaaggattgggagagaaggagagctGTCCAGTACACAGTGTAGAGTCCTGCAGGGGCTGTACTGTAGTCTCTTCAGCACAGTGAAGGAGCAGAGGGCACAGAGGGACAGCTTGTGTGTGAAGCTGGGGAacagagggacagtgtgtgtatgaagctgggggacagagggacagtgtgtgtatgAAGCTGGGGGACAGGGAGACTGAATTAATCTGGGTTGGAGGTTGCAGTGAATATAACTGGGGCAGctgcactgaacacactgatCTTACCACATCAATAGCAGCAGCGTCGCTTCCCTCAGTCGCCTCTAGAGGGCAGTGTTTACCTCAAACCCAAGGCCACACTTACAGGACGACTGCACTTCAATTGTTTAACAGACAAActtgtatctttttttctttttttttcactttaatgCCAGAATTCCTGCTGCTTGGTCACATTCTACCACCAGCATCtggtttcaattatttatttgtatgcagttagaattaaaatacagaactgtGACTTTCTAATTAACAGCAATGAAGTGGATCAATTAAATGTCCCTCCAGGCCCAAAAATAAGCCGTGAGGTTTCTGTATCTTTTAACTGGTTGCTAATGTGTTTGCAATCTGTGGCTCTTGGGGTTTCACTGCCTGACGCGTGTTTATACCCTCATCAGTGTGACTGGAATCACTTTAAAAATGTCAGCTGGTATTGGTGCTGCAGGGGGTCTCCTGtaggctgctgtctgtcagtctctgtCAGTTTTTCTGTCCACCTCTCAGTATACccgtccctctgtctgtctgtgtgacttCACTCACAGGTGAGAAAAACCTTTGTCAAAATCTTAACCTGACTGGACCGGACCGAGATGAGTGTGTCAGAGTTACTCAGAATCGATTTtctcttttgtattatttcccccatcataacattttaaatgagtaaaacacattttcctgcAGCTGATCTGACAGCTACAAGTGCACAGGTCTGCTTATTTGTGTTTCACAGggttttaaatctgtattacaGGAGCAGTATTGTAGTTGTGGGGCTTGTGTGTGCCATTGCTTTGTCTGTCCACAAGAGATCGCTGGGAGCCACTCGGCATCACAAGTCATTGATATCTTCAAAGGGGTGCTGggctttattttaagtgttccTGTTCTCACTGATACACAAAcagttcttttttaaatttattttttaaaggggaCAGTAAAGGAAGGTAATAACAGGATTGTTTTGTAACCTCGactgttatttaaatacaaaactatatacAATGTACTTTGTGggattgtattgttttacttgaatttaaagcagaaagaaacaaat

Function

NR:

description
PREDICTED: alpha-aminoadipic semialdehyde synthase, mitochondrial isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0009081 branched-chain amino acid metabolic process biological_process

KEGG:

id description
ko00640 Propanoate metabolism
ko00280 Valine, leucine and isoleucine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU93539 True 1405 lncRNA 0.43 2 41042064 41043557
TU93540 False 1375 lncRNA 0.43 2 41042064 41043557

Neighbor

gene id symbol gene type direction distance location
AMCG00014960 NA coding upstream 673 41037030 ~ 41041391 (+)
AMCG00014961 NA coding upstream 6292 41015868 ~ 41035772 (+)
AMCG00014955 NA coding upstream 282154 40745696 ~ 40759910 (+)
AMCG00014956 NA coding upstream 312107 40727802 ~ 40729957 (+)
AMCG00014948 NA coding upstream 604781 40419574 ~ 40437283 (+)
AMCG00014966 NA coding downstream 260251 41303808 ~ 41312018 (+)
AMCG00014965 NA coding downstream 319600 41363157 ~ 41364542 (+)
AMCG00014969 NA coding downstream 394023 41437580 ~ 41449836 (+)
AMCG00014976 NA coding downstream 492555 41536112 ~ 41551039 (+)
AMCG00014979 maff,LOC107734233,LOC107690056,LOC107554043,LOC107584105,LOC107692071,LOC107731405,LOC106589545 coding downstream 623221 41666778 ~ 41670067 (+)
G74800 NA non-coding upstream 167580 40874103 ~ 40874484 (+)
G74799 NA non-coding upstream 170051 40871762 ~ 40872013 (+)
G74798 NA non-coding upstream 172959 40868887 ~ 40869105 (+)
G74791 NA non-coding upstream 220607 40821238 ~ 40821457 (+)
G74786 NA non-coding upstream 258834 40782840 ~ 40783230 (+)
G74942 NA non-coding downstream 124519 41168076 ~ 41168353 (+)
G74944 NA non-coding downstream 125654 41169211 ~ 41169612 (+)
G74973 NA non-coding downstream 222762 41266319 ~ 41267002 (+)
G74977 NA non-coding downstream 226370 41269927 ~ 41270468 (+)
G74980 NA non-coding downstream 228207 41271764 ~ 41273098 (+)
G74803 NA other upstream 51160 40889974 ~ 40990904 (+)
AMCG00014954 NA other upstream 509791 40494911 ~ 40532273 (+)
AMCG00014940 NA other upstream 637426 40338215 ~ 40404638 (+)
AMCG00014942 NA other upstream 668194 40331987 ~ 40373870 (+)
G74643 NA other upstream 878067 40162016 ~ 40163997 (+)
G74925 NA other downstream 46218 41089775 ~ 41090612 (+)
G74952 NA other downstream 170393 41213950 ~ 41215242 (+)
AMCG00014963 kdelr3,LOC106601218,LOC108262534 other downstream 290929 41334486 ~ 41340160 (+)
AMCG00014968 sox10,LOC107674484,LOC107711804,LOC107563722 other downstream 349947 41393504 ~ 41405752 (+)
AMCG00014970 NA other downstream 375096 41418653 ~ 41422256 (+)

Expression


Co-expression Network