G75032 (sox10,LOC106607141,LOC106601158,LOC107104518)


Basic Information

Item Value
gene id G75032
gene name sox10,LOC106607141,LOC106601158,LOC107104518
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41405462 ~ 41405799 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU93682
ctcgccccctccctgtctctctctctctccccgcccCTTGCTATGTTTCAGGGCCGAGAGAGGGTGGTGTAGACCGGCTGCTCCCAGTGGGTGGGGCTGTGGGACTGGGGCACGCTGGAGGGGTCGGCGATGGCCGTATACAGGGGTCTCTGTGTGGGGCCCATATAGGAAAAGGCAGAGTATAACCCCGAGGGCTGGCCCGAGTGACTGTAGTAGGAGCTGGAGGTCTGGTGGTCAGGGTAGTCGAACTGGGCACGGCTGGCCAGCGCCGGGAAGGCCGAGCCGTAGTGGGGTAGGCTGAGGGGGGTGTATGTGAGCTGGGACCCGGGGGGCTGCTC

Function

symbol description
sox10 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in olfactory bulb development. Acts upstream of or within with a positive effect on iridophore differentiation; melanocyte differentiation; and xanthophore differentiation. Acts upstream of or within several processes, including nervous system development; neural crest cell migration; and sensory organ development. Predicted to be active in nucleus. Is expressed in several structures, including glioblast; head; iridoblast; nervous system; and neural crest. Used to study Hirschsprung's disease and Waardenburg's syndrome. Human ortholog(s) of this gene implicated in Kallmann syndrome; PCWH syndrome; Waardenburg syndrome type 2E; and Waardenburg syndrome type 4C. Orthologous to human SOX10 (SRY-box transcription factor 10).

NR:

description
PREDICTED: transcription factor SOX-10

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU93682 True 338 lncRNA 0.66 1 41405462 41405799

Neighbor

gene id symbol gene type direction distance location
AMCG00014967 NA coding downstream 178655 41177884 ~ 41226807 (-)
AMCG00014962 NA coding downstream 414671 40989672 ~ 40990791 (-)
AMCG00014959 LOC107676178 coding downstream 482596 40912194 ~ 40922866 (-)
AMCG00014957 NA coding downstream 506762 40886015 ~ 40898700 (-)
AMCG00014950 naga,nagab,LOC102776695 coding downstream 974420 40429382 ~ 40431042 (-)
AMCG00014972 polr2f,LOC107727050,LOC107711805 coding upstream 7613 41413412 ~ 41416011 (-)
AMCG00014974 LOC108424764 coding upstream 16062 41421861 ~ 41435628 (-)
AMCG00014973 ddx17,LOC101071115 coding upstream 46644 41452443 ~ 41460863 (-)
AMCG00014975 dmc1 coding upstream 57795 41463594 ~ 41469552 (-)
AMCG00014977 NA coding upstream 83090 41488889 ~ 41515465 (-)
G74978 NA non-coding downstream 135279 41269927 ~ 41270183 (-)
G74970 NA non-coding downstream 141555 41262768 ~ 41263907 (-)
G74950 NA non-coding downstream 194151 41211039 ~ 41211311 (-)
G74910 NA non-coding downstream 361879 41042098 ~ 41043583 (-)
G74905 NA non-coding downstream 404810 40999853 ~ 41000652 (-)
G75035 NA non-coding upstream 1118 41406917 ~ 41409612 (-)
G75064 NA non-coding upstream 44291 41450090 ~ 41451333 (-)
G75145 NA non-coding upstream 245537 41651336 ~ 41673042 (-)
G75144 NA non-coding upstream 264357 41670156 ~ 41672310 (-)
G75170 NA non-coding upstream 406534 41812333 ~ 41815261 (-)
AMCG00014964 kdelr3,LOC108262534,LOC107679478,LOC106607138 other downstream 73692 41329313 ~ 41331770 (-)
G74945 NA other downstream 235911 41169041 ~ 41169551 (-)
G74890 NA other downstream 471508 40931797 ~ 40933954 (-)
G74887 NA other downstream 480025 40922964 ~ 40925437 (-)
AMCG00014958 NA other downstream 496011 40906225 ~ 40909451 (-)
AMCG00014971 NA other upstream 64495 41470294 ~ 41474481 (-)
AMCG00014978 NA other upstream 132487 41538286 ~ 41561967 (-)
AMCG00014981 NA other upstream 349807 41755606 ~ 41766826 (-)
AMCG00015010 csdc2,csdc2a,LOC105919973,LOC108235856,LOC103382071,LOC101165181 other upstream 654491 42060290 ~ 42063901 (-)
G75272 LOC105025081,LOC108431941,LOC108274116,LOC107734154 other upstream 713488 42119287 ~ 42131232 (-)

Expression


Co-expression Network