G75035


Basic Information

Item Value
gene id G75035
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41406917 ~ 41409612 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU93685
TTCATAGAAAAAAGACAGAATACATCTTTATTTAGTGTGAGAGACATTAATAACAATCTCAGAGTGGCTACGGTTTCCATACAATTCAGAATTACATGTGCAGTTTGTCTTgcgtttgtctgtttttttagcCAACAATAGAAACTggaaatggcaaaataataataataaaataataataaaataaataaaacaaatgcgaCCAGAAACACGTGCGACTGTGACGCATGTTGGAATGACTGATCACAGCAgataaaaactgtttttgtttgtttgtttgcttcagaatataaaataactttaatatataataacaataataatcataataacagtaataacaatgAGAATTATAAGAATAcctactatatattttttatgcaagaaagaaaaaacatagaGAGAAATAggaaaattcaaaaacattttgaacatttgggacatttttgtattcatgtatttatttatttcaaggaaGAATAATTATGGGAAATAGTTTGTAATTTGGATTAGAAGTGGAGAGGAACCTCCAATATGTGttaataaagacacacacacacacacacacacacacacacacacagaggcataTAATGACAATGTTCACATTGGGAGGGACCAGAGTTGGATTAGCAGGTGGACAAGTCAATAGGATTACAGAGGGGGTTTGGGTTGGCTTTTGATTTGTCCGTTTGGCATTTGACTTGTTTTAATGGCGAGGGGGACTGCAGCCCTGCTGTTCATTAACTGattgtgtaaataattaattagctAAGTAATTCATTCTGGACCAGGATGTAAATGGTACCTATAGCATGTTTGATTGGATCATTTTCCAAATATGGGCGTTTCTAGGTCATTTGGTGTTGTCAGGCTGCTGAAATTATACGCTCGGGTTTACAGGgataaactgtttaaaaatgtccattTAAAAACGCTCTCCAAACACATATGATTCAATAAAAGTAATTGATGAGGTTTAGCCAagctgttctctctctctctctctctctctctctctctctctctctctctctctcctacaaCTGCTATTCTCACTCCCTTGGCAGTCATAGCTGTgcccccactccccccccaaCAAGACtgcaaaatggtaaaaaaaaatacaattaaaaaacaaagaaaaagtcacACAATCGCACAAAACATCATACAACTTCATAATTATTAGAGACCAAACTGATATTTAACACAACATatgtacaatacaaaaacaaaatacagcgacaacaacaatacagaccaaaacaataataaaataagctaATACATTGTACACACAAGTGTTACTGTAACACAAGCAGTGGTGAAGACTTTCAGTGTAATGGAGACAAataacataacaacaataataataataataataacaataatagatacattgttttcttttcagacaAAACAGGAAAGAAATAGCCTTCATTTTggttattaataaatcaataataataatgataaaaaaagatatatatatttatgtatttaaaacaaaaatggatttTATACACAATCTCTGAGGGTGTCGTGTGTGACCTCCTCACATGCGACCTTTGACCTGCGCAGCCGTGAGCGGAGAGTCGCGGTTACGGCCCGGTCAGCGCCGACGCTCCCACCCTGACCTACACACAGTCTGTGTCAGGAGGTCGGAGACTGAGGCTGTGCATGTGGTCAGATCCCAGGTCCCGAGGCTAAGGTACAGACTCTGAGCTTAGTCCTCAACACGTGATCTCTATAGACAGATTCTATAGCACAGACTATAGCAAAAATCCTGGATAAGCGCACAGGTTCGCACTGAGACCACTTACACCTACAGCTCTCTATAGCGATGCATCGTAGGAGTCCTTCAGTGTCTCTACAGCCGCTCCGACACTGAAGCGCTGGCTCTGCACAGCCACACAGCACGCCTGCACCCAGAGGTGTGTAGTGAGCCCCTTGTGTGtgaacacgtgtgtgtgtgtttgtgtctgtcagtgtcactttgtgtgtgtgtgtgtgcttgcatctgtgagagaaagtgtgagtttgtgtctgtgtgtgcttgtgtatgtgtgagtctGAGTGTGACcgtttgtgtatgtgtctgtgtgagagtgagaggaatatatgtgtgtttgtaggtATGAGTGTGAGAGCCGTGTTTTGtatgagtgagagagtgtggaCTTGAGCCTATGCCCACTGCATCCCTCCAGCCTGGCCTGCGGTGAGTTTGGTGAAGTTCATGCAGTAGGATCGGAGAGAGCGTTGCGTTCTGCTCATGCTGGGGTAttaacgacaacaacaacaaaaacaataacaataataaaagagcTGGATTATACTGCCACACTGTAGAGGCTCAGTCCTCCCCCGGCCCTGTGTCCCAAACTGAAATTTCCACCCGTGTTTTCTTCTcaacaattaagtaatttcagACTACTGTCCTTTCCTTATGTCTATGTGTCCTGTCGGCCCCTGGGCTGCCCCTGTGTGTCAATTGCTGTGACCTGTCCTGTTCATCCCATCGGTGTCGTTAAATGCGTTCTGCACTGTCCTGTATTataagtgtatttaaatgtgcacaACAGGGAAGCTGAATAGCACTATCTGTCTGTCGGCAAATCCCTGGTGGCCTTGGCTGTTGTGCCAGTGAGAGTTCAGACATTGTCCTAACTGAGATTATACTGGATTATACT

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU93685 True 2696 lncRNA 0.40 1 41406917 41409612

Neighbor

gene id symbol gene type direction distance location
AMCG00014967 NA coding downstream 180110 41177884 ~ 41226807 (-)
AMCG00014962 NA coding downstream 416126 40989672 ~ 40990791 (-)
AMCG00014959 LOC107676178 coding downstream 484051 40912194 ~ 40922866 (-)
AMCG00014957 NA coding downstream 508217 40886015 ~ 40898700 (-)
AMCG00014950 naga,nagab,LOC102776695 coding downstream 975875 40429382 ~ 40431042 (-)
AMCG00014972 polr2f,LOC107727050,LOC107711805 coding upstream 3800 41413412 ~ 41416011 (-)
AMCG00014974 LOC108424764 coding upstream 12249 41421861 ~ 41435628 (-)
AMCG00014973 ddx17,LOC101071115 coding upstream 42831 41452443 ~ 41460863 (-)
AMCG00014975 dmc1 coding upstream 53982 41463594 ~ 41469552 (-)
AMCG00014977 NA coding upstream 79277 41488889 ~ 41515465 (-)
G75032 sox10,LOC106607141,LOC106601158,LOC107104518 non-coding downstream 1118 41405462 ~ 41405799 (-)
G74978 NA non-coding downstream 136734 41269927 ~ 41270183 (-)
G74970 NA non-coding downstream 143010 41262768 ~ 41263907 (-)
G74950 NA non-coding downstream 195606 41211039 ~ 41211311 (-)
G74910 NA non-coding downstream 363334 41042098 ~ 41043583 (-)
G75064 NA non-coding upstream 40478 41450090 ~ 41451333 (-)
G75145 NA non-coding upstream 241724 41651336 ~ 41673042 (-)
G75144 NA non-coding upstream 260544 41670156 ~ 41672310 (-)
G75170 NA non-coding upstream 402721 41812333 ~ 41815261 (-)
G75241 NA non-coding upstream 568143 41977755 ~ 41991977 (-)
AMCG00014964 kdelr3,LOC108262534,LOC107679478,LOC106607138 other downstream 75147 41329313 ~ 41331770 (-)
G74945 NA other downstream 237366 41169041 ~ 41169551 (-)
G74890 NA other downstream 472963 40931797 ~ 40933954 (-)
G74887 NA other downstream 481480 40922964 ~ 40925437 (-)
AMCG00014958 NA other downstream 497466 40906225 ~ 40909451 (-)
AMCG00014971 NA other upstream 60682 41470294 ~ 41474481 (-)
AMCG00014978 NA other upstream 128674 41538286 ~ 41561967 (-)
AMCG00014981 NA other upstream 345994 41755606 ~ 41766826 (-)
AMCG00015010 csdc2,csdc2a,LOC105919973,LOC108235856,LOC103382071,LOC101165181 other upstream 650678 42060290 ~ 42063901 (-)
G75272 LOC105025081,LOC108431941,LOC108274116,LOC107734154 other upstream 709675 42119287 ~ 42131232 (-)

Expression


Co-expression Network