G75115


Basic Information

Item Value
gene id G75115
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41701621 ~ 41785740 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU93786
TTCcaacctttattattatttttaaattatcttattttttcttctttgtaaaaactgaaaacaaggaAGAAACAGGAGTGTTACAGCCCGTCTTTAAACTTAAAACAGAACAAGAGGAAATAAagtaaacacagaaataaaacacagtttaaGTAAGATCTGACTTCCCAGAGTTCCCACTGGGCAGCTTGTCTTGATGTGATAGTTTTGgcgttattttttaatattttttttaatctttacacTCATAGACCATCTCCAGTTGGTGTAAAaaattttttttctcttcctttattGCGATTCAGACAAACAACGAAAAGCTGcgcaaataaaattaaaaaaaaaacaggaccccccccacccccccaaaaaaatataaaattaaacaaaagcaccATGTCAAGTTACACTAGTGCCAAAGTTCTAGAACGCACACACTCCTCTCTCAGCACTGTCTTTCACTCAGTCACTCTCTCCTTTCAAGCCGACTCTCGCTCCTTCTCTCACACACTTTGATGTTCTTGTCCTGctatcactctctctcacttaCATCTCACTCCACTTTCACTCCATccaagcaagagagagagagagagagagagtgagtgtgagagactGGCCCAatttcattcacacacacacacacacacacacacacagtgtacagAACTCCAGGGGCACCACAACACCGCCAAAAagagaagacaaaaaataaaaataaacatttaaaaacgaGGTCAGCATtttggagagaaaacaaaaactaaaaacaaacaaaaacaaaacaaaaaactaaacacaaaaacacaaacattgtcATTGTTTCTCTGGATTCCATTTGCCAAGAATGaaccattgaaaaaaaaacaataaaacagtttcattttgtcaaatcaaatgtgtgtgtgtgtataaattgcaatgtcatgtgtacagtgtatctgtacctTTCATGTAAAACTGCACGTCTCTGCCTTGTTGCGTGCAGCACATTGGTACGTCAGTATCGGTGTTATGTTGGGCTCTACTCTGGACAGTATAGTGCCTTTTATAGAACATCTCTGTAAGGAactggaacagaaaaaaatgcaacaggGCTAAGCTGGTCTGTCTTTGTCCACTGTAGTGGAAGCTGTACTGTAGAGAGGAGTGTCACTGTACACCTCCAGGCCAGTAAAGCCCAGTCCAGCACAATACAGGTCAATACAGTGCAGTTACTGGGCACTGTACTGTACCGCACTACgctacactgcacacacttaCAGCACACCAAGTGCAGCGGTGCGACGGCTACCTGGCTGTGCTTCCATTACCCTTGAAAACACAGCTGTGTGCATGTCCACTGTGACATGTCAAAGTGCGCGTGTGTGTGGCACACACAGCAACTGTAAACTGAAGggggggtgtatgtgtgtggtgtgtgcacACTAAATACATAGTATGACACTGTGTGGTTAGTATGCAGTGTGTCATAGATGTGTGTGCAGTATGTACTGGTAGGTGTGTGCATGTACTGTGCGTGCATCTGTgcgtttgtgtctgtgtgcacatttatgtatgtatcagtgcatgtgtttatgtatgtgtgcgtaTCAATCTGTGTGCCTGtatatgaatgtgtgtctgtatccaGCTGCAGGTTTTCAGTCCAGTCTGTTGACTCTGTGTCCCAGTTTAAGACCGACCCCCCCAGGTACCACAGCCCCCATCTCATGCAGAGCGTCTGTCGACCgatggagaaggagagggaatGGGGGGTGCNNNNNNNNNNNagggagggagggagagagagagggagagatgagagagaggaagaggggtgAGAAGCGAGAGGGGGGGGTCAGGTTCTTCGCCTCAGTGACCTTGCTGCTGTGGACGTTCTTCAAGAGAGGGTGAATTGACTTTTGTCAACTGGATTATGTGGCCACAGACTACCCTATAGTAGGCAGGGAGAACAGTACAGTGGTGCCAGTTAGCAATGCAGGGGTATCAAAAAacttataaaacacaaatgttgtcAAATTTTAAGATTCTGATCTCGATGGGTATAGGGCGCAAGAAAGATACACTGGCATCCAAAATGGACTTCTGGACATGAGCCTTGCTTGAGTGGATGGTCCTCagtgtttcaaatgtgtttatgtgtgtgtgtctgtgtctggaaGAAGACTAACCAGAATAGTTTTTAGAAGAAGAGTTCAAAACCCCGAAGCAGCTAAACTCAAGAGGTTTTGAGCATTCACCTGTACAGACCACACTGTCACATAAAACAGCCGACCACtcgcaaaataacaaaaccacttTAAAACATCACTTAGCGCCCATTGTCTGTTTTCATTAttcctttgttttggtttgacagaaaacagttaaaacaatttaacaacATATAAAGCTATACAAGTACTGTATCAgtacagtacttgtaatattagtcctctatccctgctagatagcacttcacagttttattatgcttcttgcgttcttgattgtttttttccttgctccctttcccgtagccctcgtctgtaaccctacatcttgacagcacttagctttcaccgtccaggatgtaggaagtcacttactgtacttgtgtaaattggaatttgtaaaatgtattattttgaattgctgttttagctaaattgaatttgtaatgatttgatcgccttgtacttcactgtatttttgtactttgtttgctgtaagtcgccctggataagcgcgtctgccaaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU93786 True 2743 lncRNA 0.42 3 41701621 41785740

Neighbor

gene id symbol gene type direction distance location
AMCG00014979 maff,LOC107734233,LOC107690056,LOC107554043,LOC107584105,LOC107692071,LOC107731405,LOC106589545 coding upstream 31554 41666778 ~ 41670067 (+)
AMCG00014976 NA coding upstream 150582 41536112 ~ 41551039 (+)
AMCG00014969 NA coding upstream 251785 41437580 ~ 41449836 (+)
AMCG00014965 NA coding upstream 337079 41363157 ~ 41364542 (+)
AMCG00014966 NA coding upstream 389603 41303808 ~ 41312018 (+)
AMCG00014986 NA coding downstream 25431 41811171 ~ 41813199 (+)
AMCG00014995 NA coding downstream 146778 41932518 ~ 41934438 (+)
AMCG00014988 pick1,LOC107572282 coding downstream 184924 41970664 ~ 41978667 (+)
AMCG00014999 NA coding downstream 205458 41991198 ~ 42000963 (+)
AMCG00014996 NA coding downstream 219433 42005173 ~ 42009313 (+)
G75099 NA non-coding upstream 36177 41662154 ~ 41665444 (+)
G75049 NA non-coding upstream 250288 41450100 ~ 41451333 (+)
G74980 NA non-coding upstream 428523 41271764 ~ 41273098 (+)
G74977 NA non-coding upstream 431153 41269927 ~ 41270468 (+)
G74973 NA non-coding upstream 434619 41266319 ~ 41267002 (+)
G75140 zmp:0000000896 non-coding downstream 3721 41789461 ~ 41789825 (+)
G75141 NA non-coding downstream 4986 41790726 ~ 41791123 (+)
G75142 NA non-coding downstream 10233 41795973 ~ 41796201 (+)
G75171 pdap1a,LOC107584100,LOC107690063,LOC107734239,LOC108431950,LOC103027934 non-coding downstream 58716 41844456 ~ 41846669 (+)
G75174 NA non-coding downstream 103399 41889139 ~ 41889878 (+)
G75067 NA other upstream 219048 41471213 ~ 41482573 (+)
G75052 NA other upstream 244471 41452443 ~ 41457150 (+)
AMCG00014970 NA other upstream 279365 41418653 ~ 41422256 (+)
AMCG00014968 sox10,LOC107674484,LOC107711804,LOC107563722 other upstream 295869 41393504 ~ 41405752 (+)
AMCG00014963 kdelr3,LOC106601218,LOC108262534 other upstream 361461 41334486 ~ 41340160 (+)
AMCG00015004 phf5a,PHF5A,LOC102780084,LOC107584099,LOC106609350 other downstream 312128 42097868 ~ 42100480 (+)
AMCG00015014 rbx1 other downstream 432914 42218654 ~ 42228135 (+)
G75295 NA other downstream 604129 42389869 ~ 42405188 (+)
AMCG00015030 NA other downstream 639714 42425454 ~ 42475884 (+)
AMCG00015032 NA other downstream 841393 42627133 ~ 42629493 (+)

Expression


Co-expression Network