G75170


Basic Information

Item Value
gene id G75170
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41812333 ~ 41815261 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU93849
tttattcattagtgcaccaaatacaatgtgtatttattttaatatatatatttatatatataatacagtattacagCTTGTGGTCATTATGAGAGTACAAGACCGGCCCAGACTGTGTCTCTGGGTTGTCAGTGGCAGGGTTAATACACAGGTACATAGATGCAGTTTGCTGAATGACTGACAAAAATAGTGTACACTGACCGCTTTGGGTTCTGCTGTTaagaatcattttaaaagcttctgTCCATTTCaagaaattcaaaaataataataataaaaaaaaaacttttaaaatataagatAAAATGAGTAAATGGTTCGTGTGTGAACtgaaggagggagagatggcATTTTTCTCTCTCAGGCTGTGCAAGGCCAGTGGGTAGGCTGATTGATTGGGTGAGGACTCTGAAGTACTGGAGATCCGCCTGTTTGATTGGACGAGGAGTTTTGATGTAATGTAGCTGTACTCTAGGTCCTCTTATTTGATGTGGCATGGAACTCTGATGGTCGTAGATCCCTTTATTTGATTGGATCAGCAGCTCTGATGTAGATGCCAGTTATATTAGCAGACTTCCACTTGAATCCCATGCAGATTAACTGATCAGTCCCTCAtttaaacaaaccaagaaacaaaataaaacagtaaattaaatattttcccaAAATATGCTGATtactaaaacaaacagacaacatgTTGCACAGATTCCATTCATTATCTTACAGCTCTTGGAAAATGACACTTTTGGGTGTGTGTCCGTTAAATGTTGACTTCAGCTCACAATAGCGCAACTCTTTGCTTCCAATCCATGCGGACCGTTGGGTAATTACTATGGCTTGATCCAtccaaatatatgtattgcagaattctttatattgtattcagttttgCACATCAGTCTGTGTttacaaaagtgaaaaacaatcggccaaaaacataaaaaccccTTTAAGAGGAAGTCCCTCCCCTCACCTCACCTGTAAAGATCAGTCAATTCCCTTAAACCCCTTcgaaaacaaaaatctctttCAACCCCAGTGTTTCAAAGTCTTCTTAAagatcataaaatatacaagaGAATTCTTCTACCTTcggagtatttaaaaaaaaatgtttcaatggTTTTCTGAAAAGGTGACCAAATCTTCCCCGTTTCTCTCGCCCTGTTTCAGCCACACATTAGTCCAAAGTTCTGCCTCTTCTTTCCGTTCAATTGGCTACAatcatcatttttttctctAGAAAAAATCTCAGTAGCTAACTTTGACTGggaaatatatatgtgtttaactAGCAATCTTTATTCAACTAAAGACCTTGCTGAATAACACTGTTTGAAATGAAGGATGTGATTGGCACGCACTACAGCTGTGTGTCTGGCAGCCAGTCCAGTGGCAGTGAGGCAGTGCAGGTCACTGTGCCAGCTGTgggccctgggtaagggtgggGGGAGCGCACAGGAGAGCTGGAGAGGGGAGGTAAGGAGCCAGGGACATTGGGGAGGATGgaaatatatatgagagagtgtgtgtgtatttgtctgcCTTCCTatgcgtctgtctgtgtctttctctctgtttcagtctctttttctttgtatctgtctctttttctgtctctcttgttGTCTTTAGACTCAGATCCCTCTGCTCTGACTTCCTGTGACTCCTGTTCAGTCTTCCTGTCAGTTCAGCAATTCAACATCCTGCTGCTTCCACACCGACCTGAGAACTGCAGCACCAGGCCTAGAGATCCTTCAGGGTGTGGGTGCATGTGAGAGCAAGAGAGTGtgcgagtgagtgagtgtgagagagagtgagcgcaagagagtgtgtgtgtgagtgtgagagagagtgagagcaagagagtgtgtgtgtgagtgtgagagagattgagtgtgagagagagtgtgcgaGTAAGAGTATCTCTGCCTGTTCCATAGATCATTGCTTTAACAAGACGGACAGTGGAGAACAGAGACAATCCCAGGAGAGTCTGGGGAGTCTATTCTAGTAGTCTAGTCTACACTTTgatctcgtcctcctcctcaGGGTAGGCATATGGGGCCTTTCTCGGGGGCCTGCTAGAGTCTGTGTCCCCACGCTCGGCCTGCCGTTGCCCCTTTAAGAAACCGGCCCCTCCATAGTGCCTGGCCAGGATGTCAGCTGCTCTCTGGAACCTCTCAGCCTCCATCGCGGGCTCCACTTTGCAGGGCGGACCCACCGCTACCTCTGGCGTTGCCCTTTTTAGAGGATCTCCATTCTCTACTGCCTCCCACTCGGGCTCCTCAGGGGTCTCGCAGTAGGGGCTGGTCCGTCCGTTCAGGTGTTGGCCTTTTAAATCCTCCCCTGCGTCCGACAGGTCATCAACGGGGCTACTGACTGCCACAGAAAGGGAGGGGCCTGCCTCCTCTTCTCCAAAGCTCTGACTGGCCTCTCTTGGGGGGCTGTCAGGGCTGTGATTGGACACTGGGCTGTCAATCAACCCGAACACTTCGCTCATGAGGGAGGGCCCCAGGTCCAGGGTGAAGGAGTCCAGCGAATCGGAGCACTCCAGAGAGGGGGCGCTGTGGTCCTGCAGGGAGCTCCGacggaggtcagaggtcacaacCCCGGGGCTGTCCTGCGCCTGCTTGTCTGAGCGCGAGAGGCGGGGCAGGGTGACGAACCCAGAGTGCACACCTGGAGAAAGAgatgcagagagggagagagagaaggggggaggagatgaaggatggcagagagagaggtattaatagacagacaaacacagcaaaCTACCTTAATACATGGATTACATTGGACTGCTGTAACTTCCTTCACCAGCAGAGGGCGATATAAGCTGAGCCCTGAGCTAAAGGCATCCCAGGTTATTTTCCACTGCGCAGAC

Function

GO:

id name namespace
GO:0031399 regulation of protein modification process biological_process
GO:0031400 negative regulation of protein modification process biological_process
GO:0097367 carbohydrate derivative binding molecular_function
GO:0017076 purine nucleotide binding molecular_function
GO:0035639 purine ribonucleoside triphosphate binding molecular_function
GO:0043168 anion binding molecular_function
GO:0032553 ribonucleotide binding molecular_function
GO:0032555 purine ribonucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU93849 True 2893 lncRNA 0.47 2 41812333 41815261

Neighbor

gene id symbol gene type direction distance location
AMCG00014987 NA coding downstream 16269 41780186 ~ 41796064 (-)
AMCG00014982 NA coding downstream 88096 41704455 ~ 41724237 (-)
AMCG00014983 csnk1e,LOC103143618,LOC101067908,LOC103468446,LOC107096663,LOC106915477 coding downstream 113645 41690877 ~ 41698688 (-)
AMCG00014985 NA coding downstream 122350 41688553 ~ 41689983 (-)
AMCG00014984 NA coding downstream 124888 41674784 ~ 41687445 (-)
AMCG00014994 NA coding upstream 476 41815737 ~ 41822547 (-)
AMCG00014993 sh3bp1,LOC107690072,LOC107734168,LOC107692101,LOC107554025,LOC107584210,LOC107731399,LOC108273824 coding upstream 12848 41828109 ~ 41837721 (-)
AMCG00014992 LOC107591697,LOC107720054,LOC102309547 coding upstream 30598 41845859 ~ 41849769 (-)
AMCG00014991 NA coding upstream 150803 41966064 ~ 41968712 (-)
AMCG00014989 NA coding upstream 164060 41979321 ~ 41982799 (-)
G75145 NA non-coding downstream 139291 41651336 ~ 41673042 (-)
G75144 NA non-coding downstream 140023 41670156 ~ 41672310 (-)
G75064 NA non-coding downstream 361000 41450090 ~ 41451333 (-)
G75035 NA non-coding downstream 402721 41406917 ~ 41409612 (-)
G75032 sox10,LOC106607141,LOC106601158,LOC107104518 non-coding downstream 406534 41405462 ~ 41405799 (-)
G75241 NA non-coding upstream 162494 41977755 ~ 41991977 (-)
G75247 NA non-coding upstream 178302 41993563 ~ 42022081 (-)
G75333 NA non-coding upstream 352263 42167524 ~ 42167876 (-)
G75364 NA non-coding upstream 471033 42286294 ~ 42286584 (-)
G75365 NA non-coding upstream 471397 42286658 ~ 42286893 (-)
AMCG00014981 NA other downstream 45507 41755606 ~ 41766826 (-)
AMCG00014978 NA other downstream 250366 41538286 ~ 41561967 (-)
AMCG00014971 NA other downstream 337852 41470294 ~ 41474481 (-)
AMCG00014964 kdelr3,LOC108262534,LOC107679478,LOC106607138 other downstream 480563 41329313 ~ 41331770 (-)
G74945 NA other downstream 642782 41169041 ~ 41169551 (-)
AMCG00015010 csdc2,csdc2a,LOC105919973,LOC108235856,LOC103382071,LOC101165181 other upstream 245029 42060290 ~ 42063901 (-)
G75272 LOC105025081,LOC108431941,LOC108274116,LOC107734154 other upstream 304026 42119287 ~ 42131232 (-)
G75370 NA other upstream 476660 42291921 ~ 42292295 (-)
AMCG00015023 NA other upstream 505835 42321096 ~ 42325005 (-)
AMCG00015031 NA other upstream 693608 42508869 ~ 42521901 (-)

Expression


Co-expression Network