AMCG00015096


Basic Information

Item Value
gene id AMCG00015096
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2091675 ~ 2103854 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015096
CACCTTCTTAATGGCCACCATCTCTGTGCTGTCTATCAGCCGGGCCTGGTACACCACACCAAACGAGCCATTCCCAATAACCTTGACGTCTGTGTATGATACCTCCTGTGGGCGGTCAGGGCCCTGTCCCGGCGTGGCCACTACTGTCGTCACCTTGCTGTCCCCTTTTCCGAACCCGCTCGAGCTGCCCCCCGAGGCCTGCGAAGCCCCGGACTTTCCTGTGCCGCTCCCCCCAGCAGTGACCGCTCCGGTGGCGGCCGGGGCGGCTCCGGGGCCCCCCGGCGGCTCGGCAAACGAGCTGGTCCTGGGCCGCCCGCTGCCGCTCATGTCTCTGTGCGAGGGtgtcgggCGTTCATCTCCCACTTGGGCTGGTATGGCTGCAGTCACTGAGACGCTGGGCCAGGCTGCTGAGGGCACTCGTCTCTTGGTTCTGCAGCACTGTGTGGCAGTATGTGTGCAGGCTGCTGTGTCTGAGGGGGGCCCAGGACTTCAGGGCTCTCTTGTGCACACGACTCTATGGCGGCCCTCAGTATCGAAACCGCCCTGGTTTGACGTCATCAGCAAGTCCCCTAACCGCCGAGCAGAATCCCGCTACGGGGAGAATGGCAGCCGAGTCCTCCAATCACGTCGCTGGCGCGAGCACTACGCCAAAAACGGGCCCCCCTCAGCAGAGGAGACACAGACGATAGGGAGCCGAGAGTCCGCCGGCCTTTCAGCACCCCCACTGACGGCGCAGATTCAGTATCAGTGTCTGGAGTGCCTGGCGCTGTTTGACTCGCCAGAGgtactagcaacacaacaacagcagcagccatctccctctctccccccttcctcttcctcctcatcccGCAGCTTCAGTAttcctgcctccctccctgTTGAGTCCAGCGGTGTTCCCGGGACGGCCACACTTAGGCTGCAGCTCTGCACGGCTCAGGCCCTGGCCGAGGGCACTTCCCTGCCCTCCCTGCCCTCTCGTCGAGCATGTCTGCCCCCCCTCTTGCCCCAGGGCCCCCCACAACCCCTGCCAGCCCCCCGAGTGTCCCCCATCCTGGAGAGTGGTGGCCCTGGTGATAGTGACCGCAACACCAGGGGGACAGTGGCAGAACACAGTTACCAGAGAggggagctgctgctgctgagagtTCCCCCTGCTGGCGGAGAGGGGGTACTGCGGGCAGAGAGGGGGAAGGCAGAAAGAGGAGGTGTGGAGaatgggggggtggagggagagagagagggagaaggagaggtcGTGATAATTCATCCTTATGAGTGCTCCGAGTGTGCCCTGCTCTTTCACACCCCTGAGGACTTCCTGCACCACCAGGGGGAGCATTTCCTGGGTCAGGACAAGGAGAGTGGGGAGGGGGTGATGGAGACAGGTGtcagtggaggaggaggagagggagaggcgaTAGAGGTGGAGGAAGCTGgtgaaggagaggaggaggtgggatTGTTGCTGAGGGACAGACACTCATCTCTACTCATATCCCACCGCCGCCACCAATACCATCACCGCCagaccccctcccccaccactgCCTTGCCATCTCGCCACCGGAGCTGCACTGCCCCCCCAGCCACTCCCTTGCAGTGTGCGGAGTGCCAGCGCAGCTTCTCCTCAGCCAACCGGTTGTCCGCGCACCGCCGCGTCCACGAGCAGGGCACGCACGAGTGCCCCGAGTGCCGCAAGGTGTTCAAGAAGCCAGGCTCCCTCGAGACGCATCTGCGCACGCACTCTGGTGAGGCGCGCCATCTGTGCCTAGACTGCGGCCTGGGGTTTGCCACCGAGATGACACTCATCATGCACCGGTGTCAGTTCTGTGCCAAGACTTTCACCAACATGACCAAGTTCCTGTACCACCGCCGCACCCACGGCAACCGCCCGCCCCCGCCAGGCACCACGGTGGCAGCATCTCCCAGGAAACCGCTGGCCCACCTGAACCACCCAGCCGTGCCTCCCTGGGACCCggaaacggagagagagagggagggggagcgtgagagagagagggaaaaggagagggagagtgagagggagagagaggcttgGGCAGCAGTAGGAGCTGCAGAATCGGCCTGCGTGGCAGAAGAGATGAAGATCGAGATGGCGACACCAGGCAGTGCCCCCTGTGAGATGGGAAGAGATACCATAGCAGGGGAGAGcgacagagtgagagagcagccggagacagagaaaggaggtggagaggaggaggaggatgggagaaggaggagggaaTTGGGTCCTGAACCAGGTCCTGAGCTGGCCAGTGACAGCATGCACGAGGACTCAAACTCAAAGCAAGACGCCGTCCCGCACCATGGCTGCCAACATCCCACTGCTGTCACCACTTCCCCCCGCCCCTCCTCCTACCTGGACTTCACCTGTCCCTCCTGCCCCAAGCGCTTCCCCTCCCAGTTGCGGCTACTACGACACCGGCGGGCGGTGCACGGCTCGGAGCGCCGCTTCCGCTGTGGTGTGTGTGGAAAGCCCTTCAAAAAGCAGGTGCACGTGCGCAACCACCTGCGCACGCACACGGGCGAGCGGCCTTACCAGTGCTCCGACTGTGGCAAGACCTTCTCCTCCCTCGCCAACCTCTCACGCCATGGCCTGACGCACTCCGGCGAGCGCCCCCACCGCTGCGACATGTGTCCCCGTGCCTTTTCGCAGGCCTCCAACCTGCGCCAGCACCGCCTGCTCCATGCCCGCCCTGCCCCCTTCCCCTGCCCTGACTGCCCCGCCGGCTTTGTACGCCCAGCAAAGCTGGCTCTGCACCGCTACGCTCGCCACCCCGGTGCCCCACCCCCATACCCCTGTACCCTGTGCCCGGCCGGATTCCTGCGCAAGCGGTTGCTGGATCAGCACTGCGAAGAACAGCACCCACTCCGTCcaggagagggggaggtggTGGCTAGGGGCAGTGGGGATGGCGATGTGGCAGGGGCCCCAGCCCAGCCACATCCAGCCTGCGTTTCTGGCCCTGCATCTGTCCTTGTTCCCGTCTGTCAACTCTCCCACTCTACCAACAGCTTGAACCCTGACTCACTCGAAACACTGGCGGCGTCCAGCCCCACGGCGATGCCCCCTCGGCTGCCCCTTCTGGGCAGCAGACAGGGAACCATCCACCCGCCACTGCCACCGCTGCGGAGCCACACCCTGCCTCCCCCTCCTGCCTTCCACCACAGCTACAGCTGCATCGGAGGGCagcagggagagggacaggaaCAGGGACACAGAGATGGACACACAGAGGGGCAGGATCTTGGACAGGGAGACACAGAAGGACGCGGGTACATGGTCgcacagggacacacggacacagagggacagggaCATGCAGGCCCCAGAGTGAACAAGCTGAGACCGCACAGCCCCCAGTTCGTGTCGGTCAGTGTTGCTGTCCGGACGCCCAGTGCTGATGGCAGCCCACCCTTGGAACAGagtggagagggaggagagggaggagattCCAGTGTGAAGCAGCCCCTGAGCACAGTTCCTGACCAGCAGAGGGAGCCAGAGAGCCAACCCCAGCTTATACAGGTTCAGGAGCTGCAGGAGgCCGCTCCCTCCATTGTGTGTACAGAGCTGGGTGACACGATCACGATCATCGAGACGAGTGAGCAAGCACTGCCCCTCACCCAGGCCATCGAGATGTACCACACTGTGCTGGACAATGGGCTGGATACACTGCTGCAGCACTGAGGGAGGGGGAGACACCAAATGACAGACAGAATTCTACAGTATATCCCATGAtacatgcagacagacagacagacagacagacatatggTTAGAAGAGGGGTACGCCTCAGATGGACGGACAGTATATAAGGAACACAGTCAGACAAACGGACActttacagacagacagatggacaaacAGACCATCTTCTCTGTAGTGAATCACCTGCCAAGAAACATGGCCTGTGACTCACTTACAGTGtgtacattattgttattaatattcatattgttataattattaattattttgtaaatgacaattttttttaaaccctgttGCTTCCTGTCTGTAATTATTCATTACTGTGAGCACctgcccaccccccacctcgcccttcactgtaaataaacaac
>TU119033
AGAGGAGGCGGGCACAGGACGGCCACAGATCCGCCACAATAATGATGATTTTCTGAGTCGGCCTCCGCTTATTTTGGCCATTTAACCGGACTGGGAGATACAACGTCGAAAAACAGAAATCGGGGAGAATAAGACACTCACAACACCGGGCTGTATAGTAGAGCACTACGCCAAAAACGGGCCCCCCTCAGCAGAGGAGACACAGACGATAGGGAGCCGAGTCCAGATAGGCTGTCGCTGACACGGAGGAGGAGAAGATTAAACGGACAGataagaaaagagagagggagtgggggaggtggagggagaGGACCAGAAGCAGCGCCGGAACAACCAAAAAAGAAGGAGATAAAGTAAATGGAAAGACTCAACGGAATGGACTGAGGCAGAGAGGAGAACAAGAGACTTaccctctctcactcacactaaAAGTCACACTAACACTCCCTCACTCGCTCTATCTGCCTCCCCCTTGTTCAGTTCCAGCCTCCTGCCCTTGTTATCATCATCACGCTGCCCTGTGCCCCTTTTGGCCACCTGCGCTGCCATGTGCGACCAGCAGGGGGAGCCAGAGCTGTACATCCAGCACCAGTATATGTGTAGTGAGTGCGGTCAGCTGTTCAACACGTTGGAAGAAGTGATCCTGCACCAGCAGGAGCACACAGGGCCTGACGCtgagggggcagggggcagcGAAGAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015096 True 4114 mRNA 0.61 12 2091675 2103854
TU119033 False 702 lncRNA 0.54 2 2095875 2097334

Neighbor

gene id symbol gene type direction distance location
AMCG00015090 NA coding upstream 150916 1932410 ~ 1940759 (+)
AMCG00015087 NA coding upstream 205533 1881244 ~ 1886142 (+)
AMCG00015086 NA coding upstream 220822 1849885 ~ 1870853 (+)
AMCG00015089 NA coding upstream 284003 1788837 ~ 1807672 (+)
AMCG00015083 NA coding upstream 324973 1744695 ~ 1766702 (+)
AMCG00015095 NA coding downstream 13166 2117020 ~ 2137284 (+)
AMCG00015100 NA coding downstream 147686 2251540 ~ 2252833 (+)
AMCG00015103 NA coding downstream 155342 2259196 ~ 2259829 (+)
AMCG00015101 NA coding downstream 172858 2276712 ~ 2287242 (+)
AMCG00015105 NA coding downstream 350154 2454008 ~ 2461387 (+)
G95415 NA non-coding upstream 10838 1990628 ~ 2080837 (+)
G95298 NA non-coding upstream 318793 1743542 ~ 1772882 (+)
G95279 NA non-coding upstream 524974 1566425 ~ 1566701 (+)
G95278 NA non-coding upstream 526433 1565035 ~ 1565242 (+)
G95270 NA non-coding upstream 548245 1540003 ~ 1543430 (+)
G95464 NA non-coding downstream 26884 2130738 ~ 2131893 (+)
G95514 NA non-coding downstream 164476 2268330 ~ 2268552 (+)
G95516 NA non-coding downstream 169440 2273294 ~ 2334520 (+)
G95534 NA non-coding downstream 246792 2350646 ~ 2351071 (+)
G95603 NA non-coding downstream 525813 2629667 ~ 2631659 (+)
AMCG00015092 NA other upstream 69819 1985985 ~ 2021856 (+)
AMCG00015081 LOC107701070 other upstream 494780 1582194 ~ 1596895 (+)
AMCG00015077 NA other upstream 552117 1518658 ~ 1539558 (+)
G95117 NA other upstream 1152689 879089 ~ 938986 (+)
G95078 LOC107575789 other upstream 1544930 546229 ~ 546745 (+)
G95486 NA other downstream 97083 2200937 ~ 2217102 (+)
AMCG00015102 NA other downstream 113346 2217200 ~ 2227951 (+)
G95618 NA other downstream 553631 2657485 ~ 2658751 (+)
G95624 NA other downstream 560650 2664504 ~ 2666126 (+)
G95693 NA other downstream 702957 2806811 ~ 2808495 (+)

Expression


Co-expression Network