AMCG00015102


Basic Information

Item Value
gene id AMCG00015102
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2217200 ~ 2227951 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015102
ATGCCCACACGGTGCCGCGGCTCGCTCGTCTTCCTCCTGCTGACGGCTACAGGTGAGATAGCGGATTTTCTTTCGACCCTGATCATCACCACTGTCCAACGGGACGACCGGGGGCCCTGGTTCTGCTCGGTCAGCAACCCAGTGGGCAACACCGCCAGCCTGGGCTACAACCTCACTGTGAGCTATGGCCCAGAACAACTCTCTCTCATGGTCCACCCCCTCCTGCCTCCTTCTCTCCTGGAGGGTACATACCCAGCGGGCTCAGACCTCACCCTGTCCTGTTTGGCACAGTCCAGCCCCCCGGCGCTGTATCGCTGGGCCGTTAATGGAACCATGACTGACCATATGGGCCCAGAACTCAGGCTGCCCAGGGTCCAAGCACCCCAAATGCTCCCTGCTGGAGGGGAGGTGCCAATGGTGGGTGGGAACCTAACTCTGCAGTGCCAGGCCGACGCCCCTGTGGAGTCCAGACAGTGGAGCAGAGTCAATCAGCCCCTCCCCCTTAACGCCTCGCTCTCCAAAGACAACAGCACCCTAAGCCTCGCCCTCCTGAGCCCCTCTGATACTGGAGACTATGAGTGCAGGGCCACCAACCCAAACGCAAACCAGAGGGGGGGGGTGCAGCTGGAGCCCACCACCACCGAGTACACCACCATCCGCACCGCAGGCAGCACCCCACCCGGACAGCTATCCACGGTGTATGCAGAGGTGGGCAGACCCAGCACCAAGTCCATCACCATCATCTCCCCCAACTCGAATGGGAAGTAG
>TU119079
CCTCGACACACTGAGCTCACACACATGGACTCACAGCAGAGCGGACTCTGGTGTTTCACCGCGGGGAGGCAGTGCACAGCCACGGTTAACGGCCAGCTGCACAAAGCACAGCAGTACTGCACAGCGTAACAACGCAAGAAACGTCCGTTTGTATTAATCTGCACAACATCGCTGTATTATGCCCTCCTTCTAGCAGGGTTATTAACCAGGACTTTAGTGACTAATAAACAtcattgttgtgttgtggtttgtGATGTCtgcagtatgtttttaaaacttgCTAGTTTGTACTTTCATTTTATTAGCCTGTTGCGCTGCTGTAAGAGGTGTGGTTACCGGGAAGGAGTGGAGTTTCGGGGAGGTGCGGTCAGTTTAGGGCTGTGGAGACTCCGGTATCAGAGTATCAGTCAGCCAGTTTATTTCGCTTGCCAGTTGGACAATTAGATTGTGATTCTCTGTTGAAAGGATCAGACGCAGCTATACGGGTCAGGATGCCCACACGGTGCCGCGGCTCGCTCGTCTTCCTCCTGCTGACGGCTACAGGGTGCTGTGCTCTGCAGCTTGTCCTCCCCCCCGGCCNNNNN
>TU119080
CCTCGACACACTGAGCTCACACACATGGACTCACAGCAGAGCGGACTCTGGTGTTTCACCGCGGGGAGGCAGTGCACAGCCACGGTTAACGGCCAGCTGCACAAAGCACAGCAGTACTGCACAGCGTAACAACGCAAGAAACGATCAGACGCAGCTATACGGGTCAGGATGCCCACACGGTGCCGCGGCTCGCTCGTCTTCCTCCTGCTGACGGCTACAGGGTGCTGTGCTCTGCAGCTTGTCCTCCCCCCCGGCCNNNNN

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015102 True 768 mRNA 0.62 5 2217691 2227951
TU119079 False 584 lncRNA 0.51 2 2217200 2218096
TU119080 False 261 lncRNA 0.61 3 2217200 2218096

Neighbor

gene id symbol gene type direction distance location
AMCG00015095 NA coding upstream 79916 2117020 ~ 2137284 (+)
AMCG00015090 NA coding upstream 276441 1932410 ~ 1940759 (+)
AMCG00015087 NA coding upstream 331058 1881244 ~ 1886142 (+)
AMCG00015086 NA coding upstream 346347 1849885 ~ 1870853 (+)
AMCG00015089 NA coding upstream 409528 1788837 ~ 1807672 (+)
AMCG00015100 NA coding downstream 23589 2251540 ~ 2252833 (+)
AMCG00015103 NA coding downstream 31245 2259196 ~ 2259829 (+)
AMCG00015101 NA coding downstream 48761 2276712 ~ 2287242 (+)
AMCG00015105 NA coding downstream 226057 2454008 ~ 2461387 (+)
AMCG00015111 NA coding downstream 292373 2520324 ~ 2523197 (+)
G95464 NA non-coding upstream 85307 2130738 ~ 2131893 (+)
G95415 NA non-coding upstream 136363 1990628 ~ 2080837 (+)
G95298 NA non-coding upstream 444318 1743542 ~ 1772882 (+)
G95279 NA non-coding upstream 650499 1566425 ~ 1566701 (+)
G95278 NA non-coding upstream 651958 1565035 ~ 1565242 (+)
G95514 NA non-coding downstream 40379 2268330 ~ 2268552 (+)
G95516 NA non-coding downstream 45343 2273294 ~ 2334520 (+)
G95534 NA non-coding downstream 122695 2350646 ~ 2351071 (+)
G95603 NA non-coding downstream 401716 2629667 ~ 2631659 (+)
G95617 NA non-coding downstream 429129 2657080 ~ 2657479 (+)
G95486 NA other upstream 98 2200937 ~ 2217102 (+)
AMCG00015096 NA other upstream 113346 2091675 ~ 2103854 (+)
AMCG00015092 NA other upstream 195344 1985985 ~ 2021856 (+)
AMCG00015081 LOC107701070 other upstream 620305 1582194 ~ 1596895 (+)
AMCG00015077 NA other upstream 677642 1518658 ~ 1539558 (+)
G95618 NA other downstream 429534 2657485 ~ 2658751 (+)
G95624 NA other downstream 436553 2664504 ~ 2666126 (+)
G95693 NA other downstream 578860 2806811 ~ 2808495 (+)
G95704 NA other downstream 592516 2820467 ~ 2830621 (+)
AMCG00015142 NA other downstream 737350 2965301 ~ 2971345 (+)

Expression


Co-expression Network