AMCG00015135


Basic Information

Item Value
gene id AMCG00015135
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2887584 ~ 2891696 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015135
GAGAGGGATCTACAAATTGGGCGCCTCGTTTCtctgttgattattattattattatgttgtaagCGTTTTGTTCAGTAACCACATCGCAAACGTAACGGATCGCCACTGCAGTCGCCCTGGCCCGCTCACCCGGTGGACGTGCCTTTATTCCGCCGCAATTTGAGTGAGATTGTAACGACAGTGTCGCGTATGGACACCGACATAGTGAAGCTGGAAGAGGTGTGCCCAGGGGGGGCCAGTGAGCTGGATGGCGGCGGGGTGACGGACACACCCCCAGAGCCCTACACCTTTATTGTCCCAGACCCTCCCCCGCCCCCTGTCATTCAGACCTACCAGCATGAGAACCTGCAGTGCTACCAGTGCTTCATCACCTTCTGCAGCTCCAAGGCCAAGGAGCGGCACATGAAGAAGAGCCACCGCGAGGAGTACAAGGCCCAGCTGCAGCAGGGTGACACGCTCTTCACCTGTTATGTGTGTGATCGCTGCTTCCCCTCCTCCCAGGAGCTAACCCACCACCAGGCCCAGCACCACAAGGAGGACAAGCCCTTCAAGTGCCCTCATTGCCAGCTCAGCTTCCGCACCTTCTCAGAGGTGACCTCGCACCGTCGGCAGGTGTGCCGCGAGAAGCTGTGCGTGTGCCGGGAGTGCGGGGAGACCTTCCGCGGCCCTGCCCTGTTGCGCTCCCATCGTGAGACCCACCACCGCCGTGCcgtggaggagggggagagcgGCGCTGGTGAGGGAGGGGGCGCCGACAGCGAGGGGGACCCCTCCCTGACCCATCGCTGCGCTAAGTGTGGCCGCGGCTTCCAGACAGAGACGCAACTGCTGGAGCATCAGGAGAACCACGCCGGGGAGAAGCActgcaacagcagcagcaatggGGGCGGGGCCGGGGGGGGGCAGGGCAAGCGCAGAGGCCGCCCCCCTAAGTCTGTGGCCCCCAACcatggagagggggagaaggaggaTGGGAAGGGGGTGAAGAAGGCCAAACGGAGGAAGGAGGGGGGCGGGGAGGAGGGTGAGGGCAACCACACAGAGGGAGCAGAGGAGActaaggaagaggaggaggaggaggaggaagtagGGGGGATGGGGATAAAGGGTAAGAAGACTCAGcctggggggaggagggggaggccCTCCAAGACCCAGACTCAGACCaagacagcagcagcggcagcagaaggtgaagaagaagaagaagaagaagaagatgaagaaggagagaaggggaaggaAGAGGGGCAGGGGGAAGGAGAGGCGGATAGGGCTACACACTCCTCATCTTCTCACCAGTGTCCAGAGTGCCCCCAGGCATTCCCCTCCACGGCACGCTTGCGGTCCCACCGGCGGCAGAGCCACCCTGAGCGGCGGCCCCATGGCTGCCCCGACTGCCCAGACAGCTTCCTGCGGGCCGACCAGCTGGAGGCCCACCGCGCCCGTGCCCACAGCCGTGCCCGCCACGCCTGCACCCATTGTGGCAAGAGCTTTGGCCGAGAGGGCAACCTGCGCGCCCACCAGCAGACACAGCACCCTGAACACAGCGCCAGataa
>TU119414
TGTCACGTGACCAGAGTGAACGGGCGAGCGCCGGCTTCACCGCACTGGAGCTTCAGTTGAAGGTAAGGGGAGAGGGATCTACAAATTGGGCGCCTCGTTTCtctgttgattattattattattatgttgtaagCGTTTTGTTCAGTAACCACATCGCAAACGTAACGGATCGCCACTGCAGTCGCCCTGGCCCGCTCACCCGGTGGACGTGCCTTTATTCCGCCGCAATTTGAGTGAGATTGTAACGACAGTGTCGCGTATGGACACCGACATAGTGAAGCTGGAAGAGGTGTGCCCAGGGGGGGCCAGTGAGCTGGATGGCGGCGGGGTGACGGACACACCCCCAGAGCCCTACACCTTTATTGTCCCAGACCCTCCCCCGCCCCCTGTCATTCAGACCTACCAGCATGAGAACCTGCAGTGCTACCAGTGCTTCATCACCTTCTGCAGCTCCAAGGCCAAGGAGCGGCACATGAAGAAGAGCCACCGCGAGGAGTACAAGGCCCAGCTGCAGCAGGGTGACACGCTCTTCACCTGTTATGTGTGTGATCGCTGCTTCCCCTCCTCCCAGGAGCTAACCCACCACCAGGCCCAGCACCACAAGGAGGACAAGCCCTTCAAGTGCCCTCATTGCCAGCTCAGCTTCCGCACCTTCTCAGAGGTGACCTCGCACCGTCGGCAGGTGTGCCGCGAGAAGCTGTGCGTGTGCCGGGAGTGCGGGGAGACCTTCCGCGGCCCTGCCCTGTTGCGCTCCCATCGTGAGACCCACCACCGCCGTGCcgtggaggagggggagagcgGCGCTGGTGAGGGAGGGGGCGCCGACAGCGAGGGGGACCCCTCCCTGACCCATCGCTGCGCTAAGTGTGGCCGCGGCTTCCAGACAGAGACGCAACTGCTGGAGCATCAGGAGAACCACGCCGGGGAGAAGCActgcaacagcagcagcaatggGGGCGGGGCC

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015135 True 1561 mRNA 0.63 4 2887584 2891627
TU119414 False 964 TUCP 0.61 4 2888250 2891696

Neighbor

gene id symbol gene type direction distance location
AMCG00015129 NA coding downstream 43071 2836730 ~ 2844513 (-)
AMCG00015130 NA coding downstream 53168 2830586 ~ 2834416 (-)
AMCG00015131 NA coding downstream 62908 2819872 ~ 2824676 (-)
AMCG00015132 NA coding downstream 78868 2771667 ~ 2808716 (-)
AMCG00015127 NA coding downstream 125880 2759997 ~ 2761704 (-)
AMCG00015137 NA coding upstream 1627 2893323 ~ 2903632 (-)
AMCG00015138 NA coding upstream 13369 2905065 ~ 2910414 (-)
AMCG00015139 NA coding upstream 24292 2915988 ~ 2922512 (-)
AMCG00015136 NA coding upstream 33789 2925485 ~ 2928277 (-)
AMCG00015144 NA coding upstream 109120 3000816 ~ 3008611 (-)
G95675 NA non-coding downstream 144982 2742318 ~ 2742602 (-)
G95653 NA non-coding downstream 189761 2697252 ~ 2697823 (-)
G95637 NA non-coding downstream 210455 2676924 ~ 2677129 (-)
G95636 NA non-coding downstream 210905 2676439 ~ 2676679 (-)
G95612 NA non-coding downstream 238011 2648459 ~ 2649573 (-)
G95780 NA non-coding upstream 44598 2936294 ~ 2939095 (-)
G95778 NA non-coding upstream 51391 2943087 ~ 2945852 (-)
G95786 NA non-coding upstream 68639 2960335 ~ 2963345 (-)
G95798 NA non-coding upstream 101978 2993674 ~ 2994155 (-)
G95814 NA non-coding upstream 233735 3125431 ~ 3127592 (-)
AMCG00015140 NA other downstream 8592 2874107 ~ 2878992 (-)
G95700 NA other downstream 71517 2813647 ~ 2816067 (-)
AMCG00015117 NA other downstream 217340 2660927 ~ 2670244 (-)
G95536 NA other downstream 536534 2350660 ~ 2351050 (-)
AMCG00015099 NA other downstream 686251 2140341 ~ 2201333 (-)
G95791 NA other upstream 86501 2978197 ~ 2980408 (-)
G95850 lipe other upstream 294473 3186169 ~ 3189093 (-)
G95854 NA other upstream 304725 3196421 ~ 3197189 (-)
G95921 NA other upstream 458183 3349879 ~ 3350442 (-)
AMCG00015164 NA other upstream 711987 3603683 ~ 3607192 (-)

Expression


Co-expression Network