AMCG00015143 (LOC108431067)


Basic Information

Item Value
gene id AMCG00015143
gene name LOC108431067
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 2988655 ~ 3000677 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015143
ATGCTCATCAAGCTGTCCAGCCCCGCTCAGCTCAACAGCAACGTACAGCCTGTTGCCCTGCCCAGTGGCTGCGCCAGCGCGGGAACCCAGTGCAGAGTCTCCGGCTGGGGCAACACCATGAGCAGTGTCAGCGGTGATCGTCTCCAGTGTCTGGAGATCCCCATCCTGTCCAATGCTGACTGTCAGAACGCCTACCCTGGCATGATCACCTCGGCCATGTTCTGCGCTGGGTACCTGGAGGGAGGCAAGGACTCCTGCCAGggtgacTCTGGTGGCCCAGTGGTGTGTGGGGGGCAGCTGCAGGGTGTGGTGTCCTGGGGGTATGGCTGTGCCGAGCCAGGTGTCAGCGGTGATCGTCTCCAGTGTCTGGAGATCCCCATCCTGTCCAATGCGGACTGTCAGAACGCTTACCCTGGCATGATCACCTCCGCCATGTTCTGCGCTGGGTATCTGGAGGGAGGCAAGGACTCCTGCCAGGGTGTGGTGTCCTGGGGGTACGGCTGTGCCGAGCCAGGTAACCCCGGTGTCTACGCCAAGGTCTGCATTTTCACCGACTGGATCAGAGACACCATGGCCAGCAACTGA

Function

NR:

description
trypsin, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015143 True 585 mRNA 0.62 5 2988655 3000677

Neighbor

gene id symbol gene type direction distance location
AMCG00015141 NA coding upstream 3729 2976386 ~ 2984926 (+)
AMCG00015133 NA coding upstream 25815 2952743 ~ 2962840 (+)
AMCG00015134 NA coding upstream 54824 2931378 ~ 2933831 (+)
AMCG00015128 NA coding upstream 130898 2852458 ~ 2857757 (+)
AMCG00015120 NA coding upstream 260340 2722609 ~ 2728315 (+)
AMCG00015147 LOC105024308,LOC107379671,LOC104967681,LOC101483472 coding downstream 83691 3084368 ~ 3089951 (+)
AMCG00015146 NA coding downstream 105174 3105851 ~ 3119976 (+)
AMCG00015145 NA coding downstream 124047 3124724 ~ 3127371 (+)
AMCG00015148 NA coding downstream 169505 3170182 ~ 3173456 (+)
AMCG00015149 NA coding downstream 173242 3173919 ~ 3183191 (+)
G95742 NA non-coding upstream 45754 2942657 ~ 2942901 (+)
G95740 NA non-coding upstream 49534 2938924 ~ 2939121 (+)
G95706 NA non-coding upstream 155894 2831750 ~ 2832761 (+)
G95692 NA non-coding upstream 172441 2813701 ~ 2816214 (+)
G95686 NA non-coding upstream 209511 2778936 ~ 2779144 (+)
G95828 NA non-coding downstream 241511 3242188 ~ 3244332 (+)
G95839 NA non-coding downstream 249639 3250316 ~ 3250524 (+)
G95874 NA non-coding downstream 301998 3302675 ~ 3304322 (+)
G95878 NA non-coding downstream 311241 3311918 ~ 3325570 (+)
G95882 NA non-coding downstream 343699 3344376 ~ 3347075 (+)
AMCG00015142 NA other upstream 17310 2965301 ~ 2971345 (+)
G95704 NA other upstream 158034 2820467 ~ 2830621 (+)
G95693 NA other upstream 180160 2806811 ~ 2808495 (+)
G95624 NA other upstream 322529 2664504 ~ 2666126 (+)
G95618 NA other upstream 329904 2657485 ~ 2658751 (+)
G95955 NA other downstream 641263 3641940 ~ 3642200 (+)
AMCG00015170 NA other downstream 903022 3903699 ~ 3916734 (+)
AMCG00015173 NA other downstream 933239 3933916 ~ 3949420 (+)
G95992 NA other downstream 969152 3969829 ~ 3971683 (+)
G96030 NA other downstream 1088524 4089201 ~ 4100140 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010705 prss1 coding NC_007127.7 CM002900.2 25080764 ~ 25085327 (-)
grasscarp (Ctenopharyngodon idella) CI01000027_05679544_05681461 TRY, TRP-III coding CI01000027 null 5679479 ~ 5681477 (-)