AMCG00015144


Basic Information

Item Value
gene id AMCG00015144
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3000816 ~ 3008611 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015144
GGGACAGAGTTGTTGTCTCAGGGGCGCAGGATGTCCATCACTGTTCAACTGGCCCCTGCGAGTGTGTGCTGTGGACCGGGGCAAAGGACTGTGAGTGCAGGGGGAACACAGCGCGTCGTGTGCGTGTCTTCCATACGGACCCATATTGAAGCGACACACACGCAACATGGCAGCGCACCGGGGACGCGGTTGAACACGCTTGATTGTAGTCGTGACCTCTGTCTTTAAACATCCGTAGACGAACAAACTCAAGTCACCCCCCCACAAGCAAAGCAACTCCGAGACGAGACACAATCCCCAAGTCAAACCGTCATTGCATTGTAGCCGCATCTTTCGACCCGGTCTCTCTTTCAGCCGCCGGTGCGATGCGCTTGTCCCTGCCGGCTTTGATCTCTCATGGCCGGGTCGCCCGGCGGATGGGCCTGGGCCCCGAGTCCCGGATCAACATGCTGCGCAATATCCTGACCGGGCTGGTGCGACATGAGCGCATCGAGACCACCTGGGCCCGGGCGGACGAGGTGCGGGTGTACGCCGAGAAGGAGAAGGATCTGGTCCACAAGCTCTTCAAGGTCCTGGTGCCGCGCTTCGAGACCCAGCCGGGCCGCTACACCAACCTCTACCAGATCCCCCCCCGCCAGAACCTCGACCGGGCAAAGATGGCCGTCCTGGAGTACCGGGGCAACCCCTACCCCCCCCTGCGTACCCAACACCGAGACTCGGACCACACCCTCCTCAACACACTGCTCAGAGGCTACAGGGAGGAGAGGCAGAGCCAGGGTGGCAGCTCGGCTAACTGAGCCTGGATGGAAGAGGCCAGGCTAGTAGCCTGAAGGACGATCAGTGCTGGAGGGGCAGAGAAATGTCTCGTGGGACTGTGTGCTGTGTCTCTCCAGCAACAGGGCTGCAGACACTGCTGTGCAGAGACTTCACTTAATCAATGTAGATATCGATGGATGTAATAATGGTTGGGATAAAACTCATAGTAATTCAAATGATGATCctaataaatgttattttaaacccCAAACAGACATATATTCCTttaggagggggagagggagggaaataaGAGGGTTTGAATTTGAGAGGAAAGGGAATGAGAGAGTCTGAACatgag

Function

GO:      GO:0030529

KEGG:

id description
K02879 RP-L17, MRPL17, rplQ; large subunit ribosomal protein L17

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015144 True 1117 mRNA 0.57 2 3000816 3008611

Neighbor

gene id symbol gene type direction distance location
AMCG00015136 NA coding downstream 72539 2925485 ~ 2928277 (-)
AMCG00015139 NA coding downstream 78304 2915988 ~ 2922512 (-)
AMCG00015138 NA coding downstream 90402 2905065 ~ 2910414 (-)
AMCG00015137 NA coding downstream 97184 2893323 ~ 2903632 (-)
AMCG00015129 NA coding downstream 156303 2836730 ~ 2844513 (-)
AMCG00015154 NA coding upstream 226894 3235505 ~ 3239525 (-)
AMCG00015153 LOC103393952,LOC100707815,LOC108229619,LOC101472794,LOC105916922,LOC105910646,LOC103360126 coding upstream 233499 3242110 ~ 3247588 (-)
AMCG00015152 NA coding upstream 242370 3250981 ~ 3268761 (-)
AMCG00015158 NA coding upstream 295146 3303757 ~ 3313326 (-)
AMCG00015157 LOC103472502,LOC104927561,LOC103358743,LOC103394163,LOC108240267,LOC102201254 coding upstream 335763 3344374 ~ 3347587 (-)
G95798 NA non-coding downstream 6661 2993674 ~ 2994155 (-)
G95786 NA non-coding downstream 37471 2960335 ~ 2963345 (-)
G95778 NA non-coding downstream 54964 2943087 ~ 2945852 (-)
G95780 NA non-coding downstream 61721 2936294 ~ 2939095 (-)
G95675 NA non-coding downstream 258214 2742318 ~ 2742602 (-)
G95814 NA non-coding upstream 116820 3125431 ~ 3127592 (-)
G95933 NA non-coding upstream 463596 3472207 ~ 3472926 (-)
G95960 NA non-coding upstream 593993 3602604 ~ 3603677 (-)
G95957 LOC100846954 non-coding upstream 609162 3617773 ~ 3618298 (-)
G95968 NA non-coding upstream 721388 3729999 ~ 3730319 (-)
G95791 NA other downstream 20408 2978197 ~ 2980408 (-)
AMCG00015135 NA other downstream 109120 2887584 ~ 2891696 (-)
AMCG00015140 NA other downstream 121824 2874107 ~ 2878992 (-)
G95700 NA other downstream 184749 2813647 ~ 2816067 (-)
AMCG00015117 NA other downstream 330572 2660927 ~ 2670244 (-)
G95850 lipe other upstream 177558 3186169 ~ 3189093 (-)
G95854 NA other upstream 187810 3196421 ~ 3197189 (-)
G95921 NA other upstream 341268 3349879 ~ 3350442 (-)
AMCG00015164 NA other upstream 595072 3603683 ~ 3607192 (-)
AMCG00015180 NA other upstream 1101708 4110319 ~ 4123963 (-)

Expression


Co-expression Network