AMCG00015153 (LOC103393952,LOC100707815,LOC108229619,LOC101472794,LOC105916922,LOC105910646,LOC103360126)


Basic Information

Item Value
gene id AMCG00015153
gene name LOC103393952,LOC100707815,LOC108229619,LOC101472794,LOC105916922,LOC105910646,LOC103360126
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3242110 ~ 3247588 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015153
AGTCATGGCCACTGCCAGGACGGAGAACCCCGCTTCCGTGGTGATGGGGTTGGGGAAGCCCAACGGGCAGCTCCGAGGACAGCCCAAGCCAGCCGGCACTCACTCAGGACCACCCGGCATGGGCCCTCAACCGGGGAAGGGCCTGGGTGGCCCTCACAGACATGGAGGCGCTCCCAGCCAGAACAGCAGTGGAATCAGgttTGGTGATGACTGGAAgaagtctctccagctccctccCAAAGACACTCGACACAAAACCTCAGATGTGACAGCGACAAAGGGCAATGAGTTTGAAGATTACTGTCTGAAGAGAGAGCTGCTGATGGGCATCTTCGAGATGGGTTGGGAGAAGCCATCACCCATTCAGGAGGAGAGTATCCCCATCGCTCTTTCGGGTCGGGACATCCTGGCTCGTGCCAAGAACGGCACAGGCAAGAGCGGGGCCTACCTCATCCCCCTGCTGGAGAGGATTGACCTCAACAAGGACTTCATACAGGcCATGGTGATGGTGCCCACTCGAGAGCTGGCTCTGCAGGTCAGTCAGATCTGTATCCAGGTCAGTAAGCACCTGGGCGGGGTCAAGGTGATGGCCACCACGGGTGGCACCAACCTGCGCGATGACATCATGAGGCTGGATGAGACGGTCCATGTGGTGATTGCCACTCCGGGTCGTATTCTGGACCTGATCAAGAAGGGTGTGGCCAAGGTGGACCGTGTCCAGATGATGGTGATGGATGAGgctgACAAGCTGCTGTCCCAGGACTTTGTAATTCTGATAGAGGACATCATCAGCTTCCTGCCCAAGAACAGACAGATCCTGCTCTACTCTGCCACCTTCCCCATCAGCGTTCAGAAATTCATGTCAAAGCACCTGCAGAAGCCCTATGAGATTAACCTGATGGATGAGTTGACCCTGAAGGGCATCACACAGTATTACGCCTacgtcactgagagacagaaagTGCACTGTCTCAACACCCTCTTCTCCAGGCTTCAGATCAACCAGTCGATTATATTCTGTAACTCCACTCAGCGCGTGGAGCTGCTGGCCAAGAAGATCACCCAGCTGGGCTACTCCTGCTTCTACATTCACGCCAAGATGATGCAGGAGTACAGGAACCGTGTGTTTCATGACTTCAGAAATGGACTCTGCAGGAACCTGGTCAGCACTGACCTGTTCACCAGGGGTATCGATATCCAGGCTGTGAACGTAGTCATCAACTTCGACTTCCCCAAGAATGCCGAGACCTACCTGCACCGCATCGGCCGCTCCGGTCGTTTTGGTCACCTGGGTCTGGCCATTAACCTCATCACGTCGGACGACCGCTTCAACCTGAAGGCCATCGAGGAGCAGCTGTGCACTGACATCAAGCCCATCCCGGGCGCAATCGACAAGAGCCTGTACGTAGCCGAGTACCACTGCCAGGGCCCCCCCGGCTCACCGCCCACCACGCCGGGCCCCCCTGGAACCACCGGCCTTCCGCCTGCCGctgcacacagagagggagcTGAGCATCAGGAGCTGTAGAGGTCTGCAGCTCCAGTGAGACTCGGCTCTGCCTCAGACCACAgttccccttttttattttgtttcatttatttttctggcttCGTTTTCCCCTCCAttcttttgtgttcattttattttccatttcctccACCCGGACACTTGACTAACAGCTGACCAACCCACCTGTCAGCCCACTTGCTCCAGGACCCGATTGACCCATCCCCGGCCCAGACACCTCAACGACTCGATCCAGTATCTAGTCTATCCAGCTGATGAAACCACTGGTCCTCACCCTCTGTCTATCCAATTAACCAACCCACCCTGCGCCTCAGCACCTTTACCAACCCCTGCACTGCCTTTATGGGCTTCTTAACTAGTTTAACCAGCCTGACCCACTGCGCCGCACCAGCAAAATTAACTGAACCAGCCTAAGCGGTCTCCCAGCCCAGCCCTCCCCACAGGGCCGTAACTGACCCATCTCAACTAGCTAGACCTGGCAGCCAGATGCACCTTCCCGCTTCCCTCCTAAATCCcctctttccttccttccttccttccttccttccttccttccttccttccttccttcctccctccctccctccctcccatcGTTCTCCTCTTTTCCCTCCTAACAATACACAGATATAAGTGCCTTACCCCCCCATACAGGGCTGCTCTAACTGTCTCCTACCCCCTCTGCTCTACTCTGCTTTGTCGTATAGCACGGTAGCACTGGTCTCGAAACAACACAAGGGAGAAGGAGAATTTTAGGtggaaaatataatgaaatacagaacCCTCCCCCAAGCTTTAAAAGCTTTAGAATCCGGTTGATATGTCTTCTCTtagtctgttttttaaatttctaaTCTCCTTACTTGAACCTAACTGACAGAAGGGAGAGAGACGGAGTTGCCATTGGTACAAACCGGGGTAGGGTGGGGGCTGGGATATGAAGTTTGGCCATGACTGGAAAACCTttggggagagggggaagaatATTTGTGTGTTCTTCCCTGAGCTGATTTAATTTCCCCCGTTGGTCAGTTGTTTGATTTACAGTTCACCAGGttcactcgctctctctcctgaaTGACTAAGATCTGTTGTGTTGGTCTGACTGTCACCAACGGGAGTGTTGTCCTCTGATTGGATGGGGAGAAAGGGAGTGAGACCAGTTTAGACCGTAAGAGACGCATTGACAGACAGCCACAGATGTGCAAAGATGATAACGGACACCCAGCAGCAAAACAAACGCCCTTGTGCTTTTTcagattttggttttaattccTGTTGAGTTAGTCTAGAGGGACAGACAGAACGAGAGCCTATGACCAAGTGACAGATGCAGTGTGACAGACAGATGCACTCTTggacgttttttcttttgttttaactcTGTTCTCTATCTCGAGAAAAAACAGGCAGCTAATATTCAACCAGAAATgcccccctcaccccccactTCCTTCCCCTCTCCATCACCACCAAAGACTTGTTTACACAATCCCTTCATCCTCTactgtctctgtttctgttttttgtttaattgagaCAGAGAGGTGAAGGTGCTCGTTCAGATGAGGATAGAAGCATGTccagtatttgattttcattttttatttttggtatttggAATTGTGGGAATTTGAAGTTCCTTTTGTACCTTGTGGTGGGAATCTGGGGGGTGGAGGTCAGAGGTGGGAGTGGGTGGGACCTCTGGCTAATTAGCTATTTTGATAAAGGCCTCAAGGTGTGGTGTCTTCACAGTGGACAGCGATCCTAATTGACACGCCCCCAATTTAGCAACTTGAGTCCAGTTGAGCCGAAATTTCCAATGAGACTGTGTgaaagattgtgtgtgtgtgtgtgtgtgagagtgaatgagtgagtgagtgtgtaagaCTGAGAGAGCAACAGAGAGGGGAGCAGAGGGAGTGAGAGTTAGATTAGTAAAACCAATTAAGAAGGTAGCTCTGTAGAAATCTGGATCTCATTACCACCTTCCTCCTTCTTGCCCTGTCACagccctcctctctcctcccacaGAGACCAATGGCCTCCAGGGACCAGAGCTGGAGTCATACTGCTGTAAATAAATCCCACAACAACACCGTGTAACCTGTataaggggagagagagtgagagtggggGCAGGAGTGGGGTTGAATGTGGTGGAGGGGTGCATTGTGTATATACTGtgtacagaacaaaaaaaaaaaaacatttaatgtagattttcCT

Function

NR:

description
PREDICTED: probable ATP-dependent RNA helicase ddx6

GO: NA

KEGG:

id description
K12614 DDX6, RCK, DHH1; ATP-dependent RNA helicase DDX6/DHH1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015153 True 3757 mRNA 0.51 13 3242110 3247588

Neighbor

gene id symbol gene type direction distance location
AMCG00015154 NA coding downstream 2585 3235505 ~ 3239525 (-)
AMCG00015144 NA coding downstream 233499 3000816 ~ 3008611 (-)
AMCG00015136 NA coding downstream 313833 2925485 ~ 2928277 (-)
AMCG00015139 NA coding downstream 319598 2915988 ~ 2922512 (-)
AMCG00015138 NA coding downstream 331696 2905065 ~ 2910414 (-)
AMCG00015152 NA coding upstream 3393 3250981 ~ 3268761 (-)
AMCG00015158 NA coding upstream 56169 3303757 ~ 3313326 (-)
AMCG00015157 LOC103472502,LOC104927561,LOC103358743,LOC103394163,LOC108240267,LOC102201254 coding upstream 96786 3344374 ~ 3347587 (-)
AMCG00015156 NA coding upstream 104030 3351618 ~ 3358905 (-)
AMCG00015160 NA coding upstream 147299 3394887 ~ 3398152 (-)
G95814 NA non-coding downstream 114518 3125431 ~ 3127592 (-)
G95798 NA non-coding downstream 247955 2993674 ~ 2994155 (-)
G95786 NA non-coding downstream 278765 2960335 ~ 2963345 (-)
G95778 NA non-coding downstream 296258 2943087 ~ 2945852 (-)
G95780 NA non-coding downstream 303015 2936294 ~ 2939095 (-)
G95933 NA non-coding upstream 224619 3472207 ~ 3472926 (-)
G95960 NA non-coding upstream 355016 3602604 ~ 3603677 (-)
G95957 LOC100846954 non-coding upstream 370185 3617773 ~ 3618298 (-)
G95968 NA non-coding upstream 482411 3729999 ~ 3730319 (-)
G95978 NA non-coding upstream 623488 3871076 ~ 3871334 (-)
G95854 NA other downstream 44921 3196421 ~ 3197189 (-)
G95850 lipe other downstream 53017 3186169 ~ 3189093 (-)
G95791 NA other downstream 261702 2978197 ~ 2980408 (-)
AMCG00015135 NA other downstream 350414 2887584 ~ 2891696 (-)
AMCG00015140 NA other downstream 363118 2874107 ~ 2878992 (-)
G95921 NA other upstream 102291 3349879 ~ 3350442 (-)
AMCG00015164 NA other upstream 356095 3603683 ~ 3607192 (-)
AMCG00015180 NA other upstream 862731 4110319 ~ 4123963 (-)
G96094 NA other upstream 927291 4174879 ~ 4180441 (-)
G96191 NA other upstream 1370123 4617711 ~ 4619264 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000321_03426560_03434271 DDX6, DDX61 coding CI01000321 null 3426151 ~ 3434782 (-)